Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07280 ATGGAACCGACATCTGTTGGAACTCCTCCAGCTTCTAACACTGAGAATCACTCGACAAAAGTACCAGCTGAAAATGGCAATGCCCATGATTCAACATCCTTGCCACCAGCTTCTGGTATATCTTCCTGGGCAAGAAATCTGAGGCTTGGGGCAGCAGATCAGAACTCACAGACCGAGAGCAATGGCATGTCGGTATTTGCTCTCTGGACTAGTGGGATTGGACGACGAGTTCCTTCAAATGAGACTGCTACGGCCAATTCAGGTCCCGATCAAAGTAATTTAATTGAATCATTCACCAAAGGGTTGATGGACTCTTCGAAGAATGCAGTAAAAGCGGTGCAGACCAAAGCACGCCATATTGTCTCTCAAAATAAACGCAGATACCAGGAAGGTGGGTTTGATTTGGATATGACATACATCACTGACAATATAATAGCTATGGGATTTCCTGGTGGTGATTTTAGCTCTGGAATTTTTGGGTACATTGAGGGGTTCTATCGAAATCACATGGAAGAAGTAATCAAGTTTTTTGAAACTCATCATAAGGGAAAATACAAAGTATACAATCTTTGTTCAGAGAGGTTGTATGATGGATCACTTTTCCAAGGGAAGGTTGCAAGCTTCCCTTTCAGTGATCATAATTGTCCTTCTATTCAACTTATAGCATCATTTTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATCCAGAATGTAGTAGTTGTTCATTGTAAAGCTGGTATGGGAAGGACAGGATTGATGGTTTGCAGTCTTCTTTTGTTTCTTAAGTTCTTCCCCACTGCTGAGGAAGCCATTGATTGCTTTAACCAGAAAAGATGTATAGATGGAAAGGCTCTAACTCTCCCAAGTCAGATTAGATATGTCAAATACTTTGAACGGACTTTAACAGACTTCAATGGAGAAGTCCAGCCTGGAAGAAGGTGTATGCTAAGAGGGTTTCGGCTTCACAAATGCCCTTATTGGGTTAGACCATCCATTACGATTTCTGATCATAATGGAATTCTTTTCACAACGAAAAAGCATCCCAAGACAAAGGATCTAATGCCAGAAGATTTCTGGATCAATGCACCAAAGAAAGGATTCGTGGTCTTTGCTTTACCTGGGGAGCCTGGTCTGACAGAATTAGTTGGGGACTTCAAAATTCATTTTCATGATCGACAGGGAGATTTCTTCTGTTGGATGAATACAACAATGATAGAGAACAGAAAAACTTTAGATGGCTCAGATCTTGATGATTTTGACAAGAGAAAGATCCCTGCTCCAGGGTTCCAGGTCGAAATTGTGATGGTAGACTATAATGGCACTCTACCTGGAAAAGTCAAACCTGCGAGCAAAGGATCTGATGGCAACATAAGCAATGTCTTATCCGGTGCAAAGCCTACATCTAGTACAAGTGAGAGTAAAGGACCTTCAAACAGAGATGATGATGTATTCTCAGATAGCGATGAAGAGGAGACCAAGGGAAAACAAAAGAGAGAAGCTGCAATTGATTACAAATATATGGCACCTCATCAAGTATCTGAGGCCACCACCGACCATGTAGGGATGTTGGCACACTCAACGGATCAGCTGTCACTCCAGCATGCGGATCGTACAGAAAAGAATGCTTCTAATTCTAAAAAATCAACTACAGATAAACTTAATAAAATTCATGCAGGCCCTAACACCTCCTCCAACATGGAATCTGTAGGGGCAAGTGAAATCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCTTTTGGAGATGAAGATTTTGAGAGTGATTCAGAGGAGGCTGGTTGA 1803 0.4165 MEPTSVGTPPASNTENHSTKVPAENGNAHDSTSLPPASGISSWARNLRLGAADQNSQTESNGMSVFALWTSGIGRRVPSNETATANSGPDQSNLIESFTKGLMDSSKNAVKAVQTKARHIVSQNKRRYQEGGFDLDMTYITDNIIAMGFPGGDFSSGIFGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVASFPFSDHNCPSIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMVCSLLLFLKFFPTAEEAIDCFNQKRCIDGKALTLPSQIRYVKYFERTLTDFNGEVQPGRRCMLRGFRLHKCPYWVRPSITISDHNGILFTTKKHPKTKDLMPEDFWINAPKKGFVVFALPGEPGLTELVGDFKIHFHDRQGDFFCWMNTTMIENRKTLDGSDLDDFDKRKIPAPGFQVEIVMVDYNGTLPGKVKPASKGSDGNISNVLSGAKPTSSTSESKGPSNRDDDVFSDSDEEETKGKQKREAAIDYKYMAPHQVSEATTDHVGMLAHSTDQLSLQHADRTEKNASNSKKSTTDKLNKIHAGPNTSSNMESVGASEIKAIAADASVFSFGDEDFESDSEEAG 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07280 600 ProSiteProfiles C2 tensin-type domain profile. 312 439 IPR014020 -
Vifa1g07280 600 MobiDBLite consensus disorder prediction 1 39 - -
Vifa1g07280 600 Pfam Protein-tyrosine phosphatase 212 264 IPR000242 GO:0004725|GO:0006470
Vifa1g07280 600 CDD PTP_PTEN 136 300 IPR045101 GO:0016791
Vifa1g07280 600 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 111 308 - -
Vifa1g07280 600 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 139 302 IPR029021 -
Vifa1g07280 600 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 382 436 IPR035892 -
Vifa1g07280 600 MobiDBLite consensus disorder prediction 533 554 - -
Vifa1g07280 600 MobiDBLite consensus disorder prediction 555 570 - -
Vifa1g07280 600 MobiDBLite consensus disorder prediction 476 505 - -
Vifa1g07280 600 ProSitePatterns Tyrosine specific protein phosphatases active site. 242 252 IPR016130 GO:0016311|GO:0016791
Vifa1g07280 600 Gene3D Protein tyrosine phosphatase superfamily 111 308 IPR029021 -
Vifa1g07280 600 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 279 IPR000387 GO:0016311|GO:0016791
Vifa1g07280 600 SMART PTEN_C2_2 310 438 IPR014020 -
Vifa1g07280 600 ProSiteProfiles Phosphatase tensin-type domain profile. 126 305 IPR029023 -
Vifa1g07280 600 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 104 553 - -
Vifa1g07280 600 MobiDBLite consensus disorder prediction 453 475 - -
Vifa1g07280 600 MobiDBLite consensus disorder prediction 529 570 - -
Vifa1g07280 600 MobiDBLite consensus disorder prediction 448 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07280 Vifa-Chr1 1123631038 1123636115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07280 3 595 Protein tyrosine phosphatase (PTP) family AT3G19420 60.420 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07280 K01110 - gmx:100801622 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07280 1 1123631038 1123636115 Vifa1g07280 1 1123631038 1123636115 ECH
Vifa1g07280 1 1123631038 1123636115 Vifa3g03398 3 974267231 974274441 PCT