Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07271 ATGGGTGGTGGAGGTACACTCGTTGATGGCATTCGTCGATTTTTCAATCGTCGCAATCCTATTATCTCTCAATCACGTGATCATCACAATAATAACGATGGTTTTCTTCATTCAAACAATCTTGACAATGCCAACAACAACCCCTCTTCTTTGAATCTTCTCAAAGTTCCTAAACGTTCCAGTTTCAAATCTTCTTCAATGGATCGTAACAAAAAGGGTGCAGGAGAGGTAGAATTTTTTACCGAGTATGGAGAGGCAAGTCGGTACCAAGTCCAAGAAGTCGTTGGAAAAGGAAGTTACGGTGTTGTGGTTTCTGCCGTGGAAACTAGTACCGGGGAAAAAGTTGCAATTAAGAAAATCAACGATGTTTTTGAGCATGTATCGGATGCCACACGGATACTAAGAGAAATTAAACTCCTTCGTTTGCTACGACATCCTGATATAGTAGAAATTAAACATATAATGCTTCCCCCTTCACGAAGAGAGTTCAAGGATGTCTATGTTGTGTTTGAGTTGATGGAGTCTGATCTTCATCAAGTAATAAAGGCAAACGACGATCTTACTCCTGAGCACTATCAGTTTTTCTTGTACCAACTTCTTCGGGGCCTAAAATATACACATACAGCCAATGTGTTTCACCGTGATTTGAAGCCGAAAAACATTCTAGCTAATGCTGATTGCAAACTAAAAATATGTGATTTTGGACTTGCTCGAGTTTCGTTTAATGATGCTCCGTCGGCTATATTCTGGACTGACTATGTTGCGACTCGGTGGTATCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAATATACTCCAGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTTAGCGGTAAGCCATTGTTTCCTGGGAAAAATGTGGTGCACCAATTGGATCTCATGACTGATTTGCTTGGTACTCCTCCTGCCGAATCCATTTCGAGGATTCGAAATGAGAAGGCTAGAAGGTACCTTGGTAGCATGCGAAAAAAGCAACCAGTTCCATTCTCCAAAAAATTTCCAAATGTAGATCCATTGGCTCTTAATTTGCTGGAGCGTTTACTTGCATTTGATCCTAAAGATCGTCCAACGGCCGCAGAGGCGCTATCTGATCCTTATTTTCACGGTTTATCAAATGTGGACCGTGAACCGTCCACTCAACCGATTTCAAAACTTGAATTTGAATTTGAGAGAAGAAAATTGGCCAAAGATGATGTTAGAGAGCTGATATATCGAGAGATTTTAGAGTATCATCCCCAGATGCTCCAAGAATATCTTAGTGGTGGAGAGCAAACAAGCTTCATGTATCCAAGTGGGGTTGATCGGTTCAAGCGACAGTTTGCACATCTCGAGGACAGTTACGGGAAAGGTGAACGAGGCTCTCCATTGCTGAGACAACATGCCTCGTTACCTAGAGAGCGGGTTCCTGCTCCGAGAGATGAAAACAATCATAATAATGATTGTGAAACCCCGTCCGGATCAAATCTTCATAGCCCTTCAGGTGTAACAAATTCCGGTGACCCGGATGCACAAAACGGACTGTCAAACAGCATGACACGATGTCTGCTAAAGAGTGCCAGCATTAGCGGTTCAAAATGTATAGATGTCAAACAAAGTAAAGATCCCGAGGAGGAGACAATTCCAGAGGCCAATGATGAAGCGGTGGACGAGTTGTCGGAGAAGGTTGCCGCTCTCCTTGCATAG 1722 0.4251 MGGGGTLVDGIRRFFNRRNPIISQSRDHHNNNDGFLHSNNLDNANNNPSSLNLLKVPKRSSFKSSSMDRNKKGAGEVEFFTEYGEASRYQVQEVVGKGSYGVVVSAVETSTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDVYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYTHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLSGKPLFPGKNVVHQLDLMTDLLGTPPAESISRIRNEKARRYLGSMRKKQPVPFSKKFPNVDPLALNLLERLLAFDPKDRPTAAEALSDPYFHGLSNVDREPSTQPISKLEFEFERRKLAKDDVRELIYREILEYHPQMLQEYLSGGEQTSFMYPSGVDRFKRQFAHLEDSYGKGERGSPLLRQHASLPRERVPAPRDENNHNNDCETPSGSNLHSPSGVTNSGDPDAQNGLSNSMTRCLLKSASISGSKCIDVKQSKDPEEETIPEANDEAVDELSEKVAALLA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07271 573 ProSitePatterns Protein kinases ATP-binding region signature. 95 119 IPR017441 GO:0005524
Vifa1g07271 573 FunFam Mitogen-activated protein kinase 175 403 - -
Vifa1g07271 573 FunFam Mitogen-activated protein kinase 404 426 - -
Vifa1g07271 573 MobiDBLite consensus disorder prediction 22 50 - -
Vifa1g07271 573 MobiDBLite consensus disorder prediction 478 492 - -
Vifa1g07271 573 FunFam Mitogen-activated protein kinase 78 183 - -
Vifa1g07271 573 MobiDBLite consensus disorder prediction 538 561 - -
Vifa1g07271 573 MobiDBLite consensus disorder prediction 493 521 - -
Vifa1g07271 573 MobiDBLite consensus disorder prediction 459 521 - -
Vifa1g07271 573 Gene3D Phosphorylase Kinase; domain 1 105 426 - -
Vifa1g07271 573 CDD STKc_TDY_MAPK 88 425 - -
Vifa1g07271 573 ProSiteProfiles Protein kinase domain profile. 89 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07271 573 Pfam Protein kinase domain 89 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07271 573 ProSitePatterns MAP kinase signature. 124 227 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vifa1g07271 573 Gene3D Transferase(Phosphotransferase) domain 1 175 403 - -
Vifa1g07271 573 SUPERFAMILY Protein kinase-like (PK-like) 85 385 IPR011009 -
Vifa1g07271 573 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 88 430 - -
Vifa1g07271 573 SMART serkin_6 89 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07271 Vifa-Chr1 1123133470 1123137069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07271 74 571 MAP Kinase Gene Family AT3G18040 81.188 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vifa1g07271 Pkinase 1.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07271 - - gmx:100776784 897.886