Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07268 ATGAAGGAACAGATCGATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACTTGGAGGAATTATTGCTCTCCTAGATGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACATTTTCAAACAAGCTTTATCAAACATTTAAGAGTCACAAGCTCTTTATTAAACCAAAACCTTCTCAAACAGATTTCACTATTGCATATTATGCAGGCGAGGTGCAGTACCAGTCTGACCAATTTTTAGATAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATTTGTTGGGTTCTTCCAAATGTCCTTTTGTAGCGGGCCTTTTTCCTCAACTTCCAGATGAGACATCAAAATCTTCTAAGTTTTCTTCTATTGGTTCCCATTTTAAGCTGCAACTACAACAACTAATGGAGACATTAAACTCAACGCAGCCTCATTATGTTAGATGTGTGAAACCAAACAACCTCCTCAAGCCAGCTGTTTTTGAGAATGTCAATATTATGCAACAACTTCGTTGTGGTGGTGTTTTAGAGGCGATCGGGATTAGTTATGCTGGGTCACAGAAGCACACAACATTGAGAAGGCACGAGAGTTGGTTTAAGGCAGAGCCTCCAGCAATAGTAGTTGCAACAGTTGAGAGTTTGTGTCAAATGCTAGAAAAACAACTTTTTTCACTTGCAACCTTGCGGGTGTTGGTTGTTGATGAGGTTGACTTCATATTCAATTCTTCAAAGCAAGCGAGTTCTCTCCGGAAGATTTTGACCTATTCATCCTGCAATAACCTTCAGACAGTGTTTTCCAGTGCATCTATACCACAGCACAATCGATTTCTTAACGAAGTTGTGCAGCATAAATGGACTAAGAGGGATGTGATCCATATTCACGTTAATCCAGTGGAGCCCATGCCATCTCGCCTATATCACATATTTATAGTATGTGATAAGAAGAGAAAACTACAAACCCTGTTATCCTTGATTCAATCTGATGCTCCTGAGTCTGGCATTATATTTGTTAGTGAGCAGTCTGAGAAGTCGAAAAAGACTGGAAATGCTCCGTCCACATCCCTTGTGATTAACTTTCTAAAGACATCATATCATGGTTCTTTAAATATCCTCCTTCTCGAAGATGACATAAATTTCAATTCAAGAGCAGCTTCTATGTTGGAGGTCAAGAAAGGTGGCGGCTATCTTCTAGTGGCAACAGATGTAGCTTCTAGAGGAGTTGACTTTCCAGAAATGACTCACATATACAACTTTGATCTACCAAAAATGCCATTGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCATTTTCTGATGTTAACTGTTCTGTCACAAAGCATTATAATCTCTGAGGAGCAGTTTGTTCTGCAGAGATATGAAAATGAGTTGAGAAGCTTAGAAGATCAAGGGCTCAATTACGTTAAGCTTCACGCAGCAACCGTTGGAATTAAATCAGAAAAGCTTGAAAGTTTTAGAATTTCCATTGCCAAAGGTTCTCCAATGTGGGAAACTTTAGACTCATGTATTAAAGTTGTTGATGCAGAATCATTGAACACATTGATCCCACGACTCGCTCATTTAGTACGATCCGGTGTGGGTCTTAATACTAGAGTTGGTTTTGCCAATTTCATTACTTTGTTGCTTGAAAGTGTTGGTGTTGACATCAAGCCATATGCTAATATTCTGAAATTTATTGAAGATACTGCAGCTTTAAGTGCTGGTAACAAAAGCTCTCAAATTGCATGTGCATTTATCTTAAGAAGCTATTCATCCAGGGCAACATATGTTATTGGTGGATATCATGCAGTTATCATTCCAGTTGTTTTCCTTTCAAGGTTTGAGGATGACACTAATAAATCTCAAGCCACTCAAAAGAAACAATTTCGGCATCATCCAGCATTATTGTGGAAATTACAGGACCAGCAATCAATTGATGAATTGGATAAGGAACTGAGTCACTCAGATGGATACATCCTAATGTATGGTTCCTTACTAGGTGATACAAATTCTTCTGCTGTCGGGAGGGGGAATCATACTTTCCTGCTCAATGCAAGAATTGGGGGACAACAATTTCATTCTGTAGGATCTGAATCCACTTCTGGGCGGTCACCTTTGCGACAATGCTCTCCCTCGCCATCAAGTATGCAAAGCCAATATATTGAAGATTCTTCACCCACCCTTTCTCCTAATATTCAGGTTGGAGACCTGCCAAGATCATCACAGGTAAAAGACTTGCGGGGTCCATTACCTTCAGCGAGTTTTCAGTCAAGGTATCAACAACAAGCACGAATGACTCAACAATCAATATTACCTCCACGACAACAATTGATGCCACCGATTCAATTTCAGCCTGCACAATTGCAACAGCTAATGAGTTTACAACAACAACCAAATTATTTGCAACGAGACATGCAATCACAGGCTTCACATAAAAATACAGAAAAAAGAACTTCGGAATCTTAA 2490 0.392 MKEQIDWSYIEFVDNQDVLDLIEKKLGGIIALLDEACMFPKSTHETFSNKLYQTFKSHKLFIKPKPSQTDFTIAYYAGEVQYQSDQFLDKNKDYVVPEHQDLLGSSKCPFVAGLFPQLPDETSKSSKFSSIGSHFKLQLQQLMETLNSTQPHYVRCVKPNNLLKPAVFENVNIMQQLRCGGVLEAIGISYAGSQKHTTLRRHESWFKAEPPAIVVATVESLCQMLEKQLFSLATLRVLVVDEVDFIFNSSKQASSLRKILTYSSCNNLQTVFSSASIPQHNRFLNEVVQHKWTKRDVIHIHVNPVEPMPSRLYHIFIVCDKKRKLQTLLSLIQSDAPESGIIFVSEQSEKSKKTGNAPSTSLVINFLKTSYHGSLNILLLEDDINFNSRAASMLEVKKGGGYLLVATDVASRGVDFPEMTHIYNFDLPKMPLIIFIEQGGLVENHFLMLTVLSQSIIISEEQFVLQRYENELRSLEDQGLNYVKLHAATVGIKSEKLESFRISIAKGSPMWETLDSCIKVVDAESLNTLIPRLAHLVRSGVGLNTRVGFANFITLLLESVGVDIKPYANILKFIEDTAALSAGNKSSQIACAFILRSYSSRATYVIGGYHAVIIPVVFLSRFEDDTNKSQATQKKQFRHHPALLWKLQDQQSIDELDKELSHSDGYILMYGSLLGDTNSSAVGRGNHTFLLNARIGGQQFHSVGSESTSGRSPLRQCSPSPSSMQSQYIEDSSPTLSPNIQVGDLPRSSQVKDLRGPLPSASFQSRYQQQARMTQQSILPPRQQLMPPIQFQPAQLQQLMSLQQQPNYLQRDMQSQASHKNTEKRTSES 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07268 829 Pfam Helicase conserved C-terminal domain 324 430 IPR001650 -
Vifa1g07268 829 ProSiteProfiles Myosin motor domain profile. 1 192 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g07268 829 Coils Coil 458 485 - -
Vifa1g07268 829 MobiDBLite consensus disorder prediction 761 775 - -
Vifa1g07268 829 MobiDBLite consensus disorder prediction 802 829 - -
Vifa1g07268 829 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 491 IPR001650 -
Vifa1g07268 829 Gene3D - 309 440 IPR027417 -
Vifa1g07268 829 SMART MYSc_2a 1 238 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa1g07268 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 229 IPR027417 -
Vifa1g07268 829 MobiDBLite consensus disorder prediction 701 746 - -
Vifa1g07268 829 MobiDBLite consensus disorder prediction 802 816 - -
Vifa1g07268 829 Gene3D - 167 300 IPR027417 -
Vifa1g07268 829 PANTHER MYOSIN 2 202 - -
Vifa1g07268 829 MobiDBLite consensus disorder prediction 701 775 - -
Vifa1g07268 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 430 IPR027417 -
Vifa1g07268 829 Gene3D - 1 149 - -
Vifa1g07268 829 Pfam Myosin head (motor domain) 1 199 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07268 Vifa-Chr1 1122748018 1122750889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07268 2 192 Myosins gene family AT1G54560 88.482 1.79e-110 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07268 - - mtr:120575731 439.113