Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07251 ATGACCGTTCAACTCATCATGGAATACTTCAGTAACCACACTTTATCAAACAAGTACCAAGAGAATGATGCAGTTGAAGAGGCTGCTTCTGGTTTAGAAACCATAGAAAAACTCAAAAAGTTACTATCACCACAAACACAATCATGTTCTTCAAATGCTAAGCTTAGTTCCATGGAATCAGTTGAAACCATTGCTGACTTTGCTGTTTCGAAGTTTAAGAATGTTATTTCACTTCTGAGTCGAAACCGAACAAGATCCGGTCACGCTCGTTTCAGAAGAGCACCTTTACCTTCTGAAACTATAGTCTACCGTGCAACTCCGTTGCAGCAGATTCCTCCGCTTGTCCCCACAAATGAAGTGGTTGAGAAGAACAAGATTATTGATTTCTCTTATGCATCTGCTAATTCGTTCATGTCTTCTCTCACCGGTGATGCTGTACATGTTTCTTCTTCATTGGGAAAGCCTTGTGTTTCTTCGTGTTCGTTGAAGAGAAAGTGTGATTCTGAGAATTTCGGTTCTGGCAAGTGTGGTAGTTCCTCTAGAAACTGTCATTGTTCAAAAAAGAGAAAAATGAGATTGAGAAGAGTGGTGAGAGTAGCTGCAATAAGCTTGAAGATGGCTGAAATTCCAACGGATGATTACTCATGGAGAAAGTATGGTCAGAAACCAATTAAAGGATCACCTTATCCAAGGGGTTATTACAAGTGCAGCAGTGTTAAAGGATGTCCAGCACGCAAACATGTAGAAAGGGCTTTGGATGATCCATCAATGTTGGTAGTTACATATGAAGGAGAACACAATCACTCACTCTCTGCTATTGAAGCTAATAATCTCATCTTAGAATAG 846 0.3995 MTVQLIMEYFSNHTLSNKYQENDAVEEAASGLETIEKLKKLLSPQTQSCSSNAKLSSMESVETIADFAVSKFKNVISLLSRNRTRSGHARFRRAPLPSETIVYRATPLQQIPPLVPTNEVVEKNKIIDFSYASANSFMSSLTGDAVHVSSSLGKPCVSSCSLKRKCDSENFGSGKCGSSSRNCHCSKKRKMRLRRVVRVAAISLKMAEIPTDDYSWRKYGQKPIKGSPYPRGYYKCSSVKGCPARKHVERALDDPSMLVVTYEGEHNHSLSAIEANNLILE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07251 281 Gene3D WRKY domain 196 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g07251 281 SUPERFAMILY WRKY DNA-binding domain 208 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g07251 281 FunFam WRKY transcription factor 65 194 271 - -
Vifa1g07251 281 ProSiteProfiles WRKY domain profile. 205 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g07251 281 SMART WRKY_cls 210 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g07251 281 Pfam WRKY DNA -binding domain 212 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g07251 281 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 35 272 IPR044810 GO:0003700
Vifa1g07251 281 Pfam Plant zinc cluster domain 163 207 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07251 Vifa-Chr1 1121558848 1121559845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07251 18 274 WRKY Transcription Factor Family AT2G24570 42.581 1.17e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g07251 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07251 - - psat:127120421 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07251 1 1121558848 1121559845 Vifa1g07251 1 1121558848 1121559845 ECH
Vifa1g07251 1 1121558848 1121559845 Vifa4g04414 4 1394917826 1394919013 PCT