Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07243 ATGGGTATCAAAGATCTTCTCAGATTCATGAAACCTTACGTTGAACCCATTCACATCAAGAACTACGCTGGCAAACGCGTGGGTATTGATGCATATTCATGGCTTCATAAAGGGGCTTATTCATGTAGTATGGAACTTTGTCTTGATTCTGATAGTGAAAAGAAATTGCGATACATTGAATACTTTATGCATAGAGTGAATCTGCTTCGGTATTATAAAGTAACACCCGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGCAAAGCTGCGACTGAGAAAGAGAGGAAAAAAAAAAGGAATGCTTATCATGATTTGGCAATGGCTAAGCTCAAAGAAGGGAATGTTAATGCTGCTTCAGAGCTATTTCAGAGAGCTGTGAATATTACTCCCCTTATGGCACATAAGCTAATTCAGACTTTGAAATCAGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCTGATGCTCAGTTAGCATACTTGTCCAACCTCGAGACAGAAAAGGGCGGTATTGCGGCGGTGATTACGGAAGATAGTGATCTGATAGCTTTCGGCTGTCCAGCTGTTATTTTTAAGATGGACCGTGAAGGGAATGGTGAAAGAATAGAGTTAGAGAAGGTTTTTTCTGCCGAATCTTGTAAACCTTCATTTCGGAGTTTTGATATGAAACTTTTCACAGGTATGTGTGTTTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGCATTGGTGTTGCTCGAGCCCATGCCTTAGTTTCGAAGTATCAGAAGATCGATCGTGTCTTGTCTGTTCTTAAGTTTGAGAAAGGCGATCAAATGCCCGAAGATTACGCCAAATCCTTCAAAGCCGCACTGGCTGTATTTCAGCATGCTCGAGTATATGATATCAATACTAAAGAGCTCAAGCACATGAAGCCTCTTCCAGAAAATTTTCTCGAGTCACTTGATGAAAACCTCGATTTCTTGGGACCAGAAATTCCCTCAACTATAGTCAAAGCAATAGCCGAAGGAAACTTGAATCCATCAACTAAAGAAGCTTTTGATAAGTCTGAAATTTCTAGACTTCCTTTACACCGGATTGATCCCCAAACCAGCAATCAACTCAGAAAACGCGAAGTTTCTACATCGATTAAGCAGGAGAACTGTTTTTCAGTCTTTGGCTCTCAAAACATCAATCATCCGATTACAAAGCTTTCAGATAAAGAAAAATATTCAAATGAAGCATTGGCACTTCAGAAACTAATCATGCCATTAGGAACAAATGAAACAATGAAAAAGACCATTACAGGTGATAAAACTCCATTGAAGGTTCCGAACAACAATCCTTTTAGGATAAGAAAACACAAGGAGGAAACAGTTGAAGAAATTTCTATTGTAAGCAGTGTTGAAAATATCGATCTTGACGGCTACATGTCACCGAGTAACTCTCTAGAAAAAGGGTCTAAGAATGAAGAAATTTCTGTTGTAAGCAGTGTGGAATATATCGATCTTGATAACTACATGTCACCACAAGAAAAAGGGTCTGCGAATTCTTCAAGGAAAAGGAAATTTGAGAGTATTTGCTTAGATAAAGTAGAAGCGAAAGACGAACAGGTTTCGGGAGTAACCGAAGTGGAATGCTTGAATGCGGAGTCTCAAGAAAGTGTTAAGTCCAAGATTAGGAAGAGTGATGATTTGAAAGGAAGTGAAAAGAAGTCCAAGATAAGTAACTCCAAGAAAAAGGGGAGTAACATTAGAACTATTCTGAATTTCTTTTCAAGAGTGTAA 1767 0.3882 MGIKDLLRFMKPYVEPIHIKNYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSEKKLRYIEYFMHRVNLLRYYKVTPVVVFDGGNVPCKAATEKERKKKRNAYHDLAMAKLKEGNVNAASELFQRAVNITPLMAHKLIQTLKSENIEFVVAPYEADAQLAYLSNLETEKGGIAAVITEDSDLIAFGCPAVIFKMDREGNGERIELEKVFSAESCKPSFRSFDMKLFTGMCVLAGCDFLPSVPGIGVARAHALVSKYQKIDRVLSVLKFEKGDQMPEDYAKSFKAALAVFQHARVYDINTKELKHMKPLPENFLESLDENLDFLGPEIPSTIVKAIAEGNLNPSTKEAFDKSEISRLPLHRIDPQTSNQLRKREVSTSIKQENCFSVFGSQNINHPITKLSDKEKYSNEALALQKLIMPLGTNETMKKTITGDKTPLKVPNNNPFRIRKHKEETVEEISIVSSVENIDLDGYMSPSNSLEKGSKNEEISVVSSVEYIDLDNYMSPQEKGSANSSRKRKFESICLDKVEAKDEQVSGVTEVECLNAESQESVKSKIRKSDDLKGSEKKSKISNSKKKGSNIRTILNFFSRV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07243 588 Gene3D - 1 213 - -
Vifa1g07243 588 SMART xpgineu 141 213 IPR006086 GO:0004518
Vifa1g07243 588 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Vifa1g07243 588 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Vifa1g07243 588 Gene3D - 218 291 - -
Vifa1g07243 588 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Vifa1g07243 588 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Vifa1g07243 588 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Vifa1g07243 588 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vifa1g07243 588 FunFam Exonuclease 1, putative 1 214 - -
Vifa1g07243 588 MobiDBLite consensus disorder prediction 548 570 - -
Vifa1g07243 588 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Vifa1g07243 588 CDD H3TH_FEN1-like 225 295 - -
Vifa1g07243 588 MobiDBLite consensus disorder prediction 544 574 - -
Vifa1g07243 588 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 348 IPR036279 -
Vifa1g07243 588 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Vifa1g07243 588 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Vifa1g07243 588 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 548 IPR006084 -
Vifa1g07243 588 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Vifa1g07243 588 FunFam exonuclease 1 218 291 - -
Vifa1g07243 588 SMART xpgn3 1 102 IPR006085 GO:0004518
Vifa1g07243 588 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07243 Vifa-Chr1 1120716552 1120719762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07243 1 391 Core DNA Replication Machinery Family AT5G26680 23.775 2.58e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07243 K10746 - gmx:100817932 771.541