Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07241 ATGGAAGGTGAAGGTGTGAAAGTAGAGAGAGAAACCATGGGAACAACAAGGAAGCGAAACGGCGTCGTTGTGGATGGTGAGAGAAGATACAAAGGAATTCGTATGAGGAAGTGGGGAAAATGGGTTGCTGAAATTCGGGAACCGAATAAACGTTCTAGAATTTGGTTAGGTTCCTATTCTACCCCCGTCGCTGCCGCGAGAGCTTACGACACCGCCGTTTTCTATCTCCGAGGACCGTCCGCTCGTCTAAACTTTCCAGAGCTTCTGGTCGGCGAAAACGCTGCCGTTGTTAATGGTGGTGATATGTCGGCTGCTTCGATCAGGAAGAAAGCTACTGAGGTTGGTGCTAGGGTTGATGCTCTTCAAGCTACGCTTCATCAACATCATCATAATCATAACCATAATCATCATCACAACCATAACCATAACCATAACCACCGTGTGATGCCGATGCCGGTGGTGGTTGGTGGTGGCGGTGGCGGTGATTTAGCAGAGCGGGTTGATTTGAATAAGATTCCTGAACCGGAGAATTCGGATTGTGAATGGGAAGTTAGTTAG 558 0.4821 MEGEGVKVERETMGTTRKRNGVVVDGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLVGENAAVVNGGDMSAASIRKKATEVGARVDALQATLHQHHHNHNHNHHHNHNHNHNHRVMPMPVVVGGGGGGDLAERVDLNKIPEPENSDCEWEVS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07241 185 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Vifa1g07241 185 MobiDBLite consensus disorder prediction 157 185 - -
Vifa1g07241 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 15 146 - -
Vifa1g07241 185 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Vifa1g07241 185 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Vifa1g07241 185 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vifa1g07241 185 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Vifa1g07241 185 CDD AP2 29 88 IPR001471 GO:0003700|GO:0006355
Vifa1g07241 185 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Vifa1g07241 185 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Vifa1g07241 185 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07241 Vifa-Chr1 1119677614 1119678171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07241 1 183 AP2-EREBP Transcription Factor Family AT5G67190 56.995 8.02e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g07241 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07241 K09286 - gmx:100783682 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07241 1 1119677614 1119678171 Vifa1g07241 1 1119677614 1119678171 ECH