Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07237 ATGTGGAATCTAAATGACTCACCCGATGAGAGAAAAAAGTATGAATCAGAAGGATGTTCAATCGACGGTGAGGAAGTTGATGAAAAAGGAAAAGGAGTTGGATCTGTTTCAAATTCAAGTTCATCTGTAGTTGTTATAGAAGATGGATCGGAAGAAGAAGGTAACGGTAACAGCAATAACAGTAAAGGTAACGGAGTTGTAAAGAAAAGAACTAGTAAGATTTTCGGATTCTCAATGGATGACAGTGACGAGTTTCCGCCGGTGACTAGACAGTTTTTTCCGGTGGAGGATTCTGATGTGACAGCGGTGGCGGATTGTTCTCCCGGTAGAGGCGGCGGAGGAGTTAGTTCTTCGTTTCCACGTGCTCACTGGGTTGGTGTGAAGTTTTGTCAATCGGAAACGGTTAACGGTGGGAAGTCAGTTGAAGCGTCGTCCCAACCGATTAAGAAGAGTCGTCGTGGACCACGGTCGAGAAGTTCGCAGTATAGAGGTGTTACTTTTTACCGACGAACAGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACGGCACATGCAGCTGCTCGTGCATATGATAGAGCTGCAATTAAGTTCAGAGGAGTGGAAGCTGATATTAACTTCAACATAGAAGATTATGAAGAGGATTTGAAGCAGATGAGCAATTTAACCAAGGAAGAGTTTGTGCATGTGCTTCGGCGACAAAGCACTGGATTTCCGAGAGGGAGTTCGAAATATAGAGGTGTAACTTTGCATAAATGTGGAAGATGGGAAGCGCGAATGGGTCAATTCTTAGGCAAAAATTTGATTCGATTTACTAGGTATGTTTATCTGGGTTTGTTCGATACCGAGGTTGAAGCTGCAAGGGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAAGCTGTTACCAATTTTGATCCCAGCATCTATGATAATGAGCTTAATACTACTACTGAATCCTCAGGTAATGCTGCGGATCATAATCTGGATTTAAGTTTGGGTAGTTCAAGTTCTAAAGGTAGTAATAGTCAAGCATTTGGGAATTACAACACAGATCAGCATATGGCACCTGAATCAAATTGGCGGAATGGTGGAATCCGGCCTAAACCGGTAAATATACTTCCAAAACCATGTGGTGTAAGTAACATGGAAGGCTATGGAAGGGACGGTTATGTAGAGAGCGAAGCCTTGCGGATGTTAAGCCAAACTCATCTTAAATCTCCGGTCACTAATGAAATGCATAGATATGGTCCCTACAGATCACCTGTTGAACAACAACACCCTCAAATGCTTCACAGTTTTCCACATCTTCACCCCTCAAATTTTCATGTATCTAGCAGCAGCAGCAACGGAGGCCGAATTGGAAGCGATTTATCATTATCAATGACGGATCAACAAAAATGGCAAACTGGGCCGCCACATTCGTTCGCAACTGCTGTTGCAGCATCATCAGGATTCCCACCTCAGATAACAAGACCCTCTTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCTTGA 1572 0.4326 MWNLNDSPDERKKYESEGCSIDGEEVDEKGKGVGSVSNSSSSVVVIEDGSEEEGNGNSNNSKGNGVVKKRTSKIFGFSMDDSDEFPPVTRQFFPVEDSDVTAVADCSPGRGGGGVSSSFPRAHWVGVKFCQSETVNGGKSVEASSQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKNLIRFTRYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNTTTESSGNAADHNLDLSLGSSSSKGSNSQAFGNYNTDQHMAPESNWRNGGIRPKPVNILPKPCGVSNMEGYGRDGYVESEALRMLSQTHLKSPVTNEMHRYGPYRSPVEQQHPQMLHSFPHLHPSNFHVSSSSSNGGRIGSDLSLSMTDQQKWQTGPPHSFATAVAASSGFPPQITRPSSSSQGWLQKNGFHTLMRPS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07237 523 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 87 423 - -
Vifa1g07237 523 MobiDBLite consensus disorder prediction 324 368 - -
Vifa1g07237 523 ProSiteProfiles AP2/ERF domain profile. 161 217 IPR001471 GO:0003700|GO:0006355
Vifa1g07237 523 MobiDBLite consensus disorder prediction 494 514 - -
Vifa1g07237 523 MobiDBLite consensus disorder prediction 136 161 - -
Vifa1g07237 523 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Vifa1g07237 523 Pfam AP2 domain 252 307 IPR001471 GO:0003700|GO:0006355
Vifa1g07237 523 CDD AP2 252 318 IPR001471 GO:0003700|GO:0006355
Vifa1g07237 523 MobiDBLite consensus disorder prediction 324 380 - -
Vifa1g07237 523 ProSiteProfiles AP2/ERF domain profile. 253 316 IPR001471 GO:0003700|GO:0006355
Vifa1g07237 523 SUPERFAMILY DNA-binding domain 252 318 IPR016177 GO:0003677
Vifa1g07237 523 SMART rav1_2 161 223 IPR001471 GO:0003700|GO:0006355
Vifa1g07237 523 SMART rav1_2 253 322 IPR001471 GO:0003700|GO:0006355
Vifa1g07237 523 MobiDBLite consensus disorder prediction 1 66 - -
Vifa1g07237 523 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Vifa1g07237 523 MobiDBLite consensus disorder prediction 33 66 - -
Vifa1g07237 523 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g07237 523 PRINTS Ethylene responsive element binding protein signature 298 318 IPR001471 GO:0003700|GO:0006355
Vifa1g07237 523 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700|GO:0006355
Vifa1g07237 523 FunFam AP2-like ethylene-responsive transcription factor 160 219 - -
Vifa1g07237 523 Gene3D AP2/ERF domain 252 317 IPR036955 GO:0003700|GO:0006355
Vifa1g07237 523 Gene3D AP2/ERF domain 160 219 IPR036955 GO:0003700|GO:0006355
Vifa1g07237 523 MobiDBLite consensus disorder prediction 494 523 - -
Vifa1g07237 523 CDD AP2 161 218 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07237 Vifa-Chr1 1118130187 1118132864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07237 1 354 AP2-EREBP Transcription Factor Family AT4G36920 65.217 1.16e-130 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa1g07237 AP2 9.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07237 K09284 - gmx:100786333 704.901