Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07236 ATGTGGAATCTAAATGACTCACCCGATGAGAGAAAAAAGTATGAATCAGAAGGATGTTCAATCGACGGTGAGGAAGTTGATGAAAAAGGAAAAGGAGTTGGATCTGTTTCAAATTCAAGTTCATCTGTAGTTGTTATAGAAGATGGATCGGAAGAAGAAGGTAACGGTAACAGCAATAACAGTAAAGGTAACGGAGTTGTAAAGAAAAGAACTAGTAAGATTTTCGGATTCTCAATGGATGACAGTGACGAGTTTCCGCCGGTGACTAGACAGTTTTTTCCGGTGGAGGATTCTGATGTGACAGCGGTGGCGGATTGTTCTCCCGGTAGAGGCGGCGGAGGAGTTAGTTCTTCGTTTCCACGTGCTCACTGGGTTGGTGTGAAGTTTTGTCAATCGGAAACGGTTAACGGTGGGAAGTCAGTTGAAGCGTCGTCCCAACCGATTAAGAAGAGTCGTCGTGGACCACGGTCGAGAAGTTCGCAGTATAGAGGTGTTACTTTTTACCGACGAACAGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACGGCACATGCAGCTGCTCGTGCATATGATAGAGCTGCAATTAAGTTCAGAGGAGTGGAAGCTGATATTAACTTCAACATAGAAGATTATGAAGAGGATTTGAAGCAGATGAGCAATTTAACCAAGGAAGAGTTTGTGCATGTGCTTCGGCGACAAAGCACTGGATTTCCGAGAGGGAGTTCGAAATATAGAGGTGTAACTTTGCATAAATGTGGAAGATGGGAAGCGCGAATGGGTCAATTCTTAGGCAAAAAGTATGTTTATCTGGGTTTGTTCGATACCGAGGTTGAAGCTGCAAGGGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAAGCTGTTACCAATTTTGATCCCAGCATCTATGATAATGAGCTTAATACTACTACTGAATCCTCAGGTAATGCTGCGGATCATAATCTGGATTTAAGTTTGGGTAGTTCAAGTTCTAAAGGTAGTAATAGTCAAGCATTTGGGAATTACAACACAGATCAGCATATGGCACCTGAATCAAATTGGCGGAATGGTGGAATCCGGCCTAAACCGGTAAATATACTTCCAAAACCATGTGGTGTAAGTAACATGGAAGGCTATGGAAGGGACGGTTATGTAGAGAGCGAAGCCTTGCGGATGTTAAGCCAAACTCATCTTAAATCTCCGGTCACTAATGAAATGCATAGATATGGTCCCTACAGATCACCTGTTGAACAACAACACCCTCAAATGCTTCACAGTTTTCCACATCTTCACCCCTCAAATTTTCATGTATCTAGCAGCAGCAGCAACGGAGGCCGAATTGGAAGCGATTTATCATTATCAATGACGGATCAACAAAAATGGCAAACTGGGCCGCCACATTCGTTCGCAACTGCTGTTGCAGCATCATCAGGATTCCCACCTCAGATAACAAGACCCTCTTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCTTGA 1554 0.4344 MWNLNDSPDERKKYESEGCSIDGEEVDEKGKGVGSVSNSSSSVVVIEDGSEEEGNGNSNNSKGNGVVKKRTSKIFGFSMDDSDEFPPVTRQFFPVEDSDVTAVADCSPGRGGGGVSSSFPRAHWVGVKFCQSETVNGGKSVEASSQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNTTTESSGNAADHNLDLSLGSSSSKGSNSQAFGNYNTDQHMAPESNWRNGGIRPKPVNILPKPCGVSNMEGYGRDGYVESEALRMLSQTHLKSPVTNEMHRYGPYRSPVEQQHPQMLHSFPHLHPSNFHVSSSSSNGGRIGSDLSLSMTDQQKWQTGPPHSFATAVAASSGFPPQITRPSSSSQGWLQKNGFHTLMRPS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07236 517 FunFam AP2-like ethylene-responsive transcription factor 252 312 - -
Vifa1g07236 517 ProSiteProfiles AP2/ERF domain profile. 161 217 IPR001471 GO:0003700|GO:0006355
Vifa1g07236 517 MobiDBLite consensus disorder prediction 136 161 - -
Vifa1g07236 517 SMART rav1_2 161 223 IPR001471 GO:0003700|GO:0006355
Vifa1g07236 517 SMART rav1_2 253 316 IPR001471 GO:0003700|GO:0006355
Vifa1g07236 517 SUPERFAMILY DNA-binding domain 252 312 IPR016177 GO:0003677
Vifa1g07236 517 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700|GO:0006355
Vifa1g07236 517 PRINTS Ethylene responsive element binding protein signature 292 312 IPR001471 GO:0003700|GO:0006355
Vifa1g07236 517 MobiDBLite consensus disorder prediction 1 66 - -
Vifa1g07236 517 FunFam AP2-like ethylene-responsive transcription factor 160 219 - -
Vifa1g07236 517 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Vifa1g07236 517 MobiDBLite consensus disorder prediction 33 66 - -
Vifa1g07236 517 MobiDBLite consensus disorder prediction 488 517 - -
Vifa1g07236 517 Gene3D AP2/ERF domain 160 219 IPR036955 GO:0003700|GO:0006355
Vifa1g07236 517 Gene3D AP2/ERF domain 252 311 IPR036955 GO:0003700|GO:0006355
Vifa1g07236 517 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 87 417 - -
Vifa1g07236 517 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g07236 517 MobiDBLite consensus disorder prediction 318 362 - -
Vifa1g07236 517 MobiDBLite consensus disorder prediction 488 508 - -
Vifa1g07236 517 CDD AP2 252 312 IPR001471 GO:0003700|GO:0006355
Vifa1g07236 517 MobiDBLite consensus disorder prediction 318 374 - -
Vifa1g07236 517 Pfam AP2 domain 252 301 IPR001471 GO:0003700|GO:0006355
Vifa1g07236 517 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Vifa1g07236 517 ProSiteProfiles AP2/ERF domain profile. 253 310 IPR001471 GO:0003700|GO:0006355
Vifa1g07236 517 CDD AP2 161 218 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07236 Vifa-Chr1 1118130187 1118132864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07236 1 348 AP2-EREBP Transcription Factor Family AT4G36920 66.575 7.34e-134 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa1g07236 AP2 8.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07236 K09284 - gmx:100786333 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07236 1 1118130187 1118132864 Vifa1g07236 1 1118130187 1118132864 ECH
Vifa1g07236 1 1118130187 1118132864 Vifa4g02633 4 807822161 807824677 PCT