Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07235 ATGACACCACGGACGGATGACCTAATCGCCACCGACGACGATGACAGCGACGACGACCGTCTCCAAGAAGACATGGCCGCCGTCGCGCGAGCCTGTAAGTTCCAAGTAGACGAATTTCCATCTGAAGAAGATCCTCTTTTGGCTTCTGGAGATGAAATTCCGTATGAAAAAGATCCTCTTTTGGCCGCTGGCGACGCTATTGTCCCATTCACCGCCACTGCGGACTCTGACTCTGATGGACAGAGTGATCGTGAATGTCTCAATAGAGTTAAAAGTCTCTGTCAGGATATTGATTCTATTCCTCATCTGCCGCCGATGACAGCTGCTTCTGATGATGACGAAGATGACCTGGAAACAGTTCGCGCCATCTTCAAACGGTTTTCCGCTTATGATAAAGGTGGAAGGGAAGCATGGGCTGGGGGGGATCAGACCCCGAGTTTAATTGCTGAGAAGGATGTTGTCCAGAGCCCCATTTCTGGCAGCTCAGATGCTGATCAAGATTTCCTCCGTCGGCTCAAGCTTTTGTTGATGCCCTCTCGAAGAATAGAGCTCTCCAGCAGTTTCTTAGAAGTTTCATGCAATAGAAGAACGGGGAATGCTTTATCACTGAAAAAGGATCCGCGTGTGCAGTTAATATCATCCAAGAAGTCTTTTGCAACAAAAAAGTCAAAGAACAATAATAAGAAAGTGTCTGCAATGTGTTATGGCCCAGATGAGAATTCTCGTGTTGCTAACTATAAGATGGTATTGGAAAGATTTCCACTTTCATTGGATCGAAAAAAGTGGTCAAACAAGGAAAGGGAGAAACTTTCAATAGGAATTAAGCAACAATTCCAAGAAACAGTGTATCAAATTTCAGTAGATAGAATGGGTTCAGAGTGCTCACCTGGAGACATAATTGATTCATTTAAAGGTCTTGAAATCACACCAGCGAGGATTAGAGCATTTTTACCTAAAGTTAAATGGGATTCATTGGCTGCTATGCATATTACTGGCCGTACTGGTTCTGAATGTGAATCAAGGTGGTTGAATTGTGAAGACCCTTTGATCAATCATGGCTCATGGACTGGTGAAGAGGATAGGACTCCATTTCAATGCTTGGCTCGATACCAAAGGAGCTTAAATTCTTCGATGATAAATAGTGAATGGACCGAGGAAGAAGATGCTCAACTTTGTTCTGCTGTTGCATATTTTGGTGAGAGTAATTGGCAGTCTGTGGCTTCTGTTTTAGAACGGCGGACGGGAACTCAGTGCTCAAATAGATGGAAAAAATCAATTTGTCCTGTGAGGAAAGGAAGCTTTACACCCGAGGAGGATGAACGCCTTACAGTAGCAGTTGCGCTGTTTGGAAGGAAATGGAATCAAATAGCTAAATATGTTCCTGGCCGGATTCAATCTCAGTGTAGAGAAAGATACCTTAATAGTTTGGATCCTTCTTTGAAATGGGGTGGATGGACGGAGGAAGAGGATTTAAGATTAGAAGCTGCAATCACCAAGTATGGATATTGCTGGTCTAAGGTGGCTGAAGATGTACCTCCCCGCACTGATTCTCAATGTCGGAAGAGATGGAAAGTGATATGTCCTGAACAAGTTCCTCTGCTTCAAGAAGCAAGGAAGAGGCAAAGGTCTCTTCTTGCCAGGAACTTTGTTGATCGAGAATCAGAACGTCCAGCCCTTACACTGAATGACTTCATTCCTTTACAAATGTTAGTTCCACCATCTGATGTTGATGCTGAGAAACTCCCAAGGAAGCGGAAGAGACAGTCGCGCGGCCTTTGCAAGGAAGAGAGGTCCAAGAAACATGGAAAGGAGACTGAACTTTGTACTGGGGAAGCACGAGGTGCAGAGCCCAAGAAAGAGAGACCTAAAAGACATGCGAAAAAGAAATCATTTTATCCCGAGGATGTAGAAGATATAGTTCCCGAGAAAGAGAAGCCCAAAAGACATTTGAAGAAGGTTCGAATTTGTCCGGAGGAAGTACAGTATATAGCAGAATATAGTGACAGGGTCAAGACTTCTGGTGGTGGCGGTGTTCCATTCTCTGCACCAAGCAATGTTCCCAAGAAAATGAGATCTAAAAGAGGTCCTAAAAAGTCTCAGCCCAAGGAAGTAGATAATATAGCATGCAGCGACGAGGCCAAGACCTGTATCAAGAGTTCAGAAAAGCAAGATGAAGACAATGTAACACTTGCATGCTTTTTGCGCAACAAATCAAAGAAGAAACTAACGAAATGTACCAAAAATGCCAGCAAGGGTTTGTCTTCCTCTAGGACAAAAATTGTATCTAAGAAGGTTCAAAATCATATCCCATCTGGTGAGCAAGACAGGTTGTCATGTGGTATTGGTGGAACTAAAGATTTGTCAATGCAAACAGAAAATGATTCTAGCAGACAAGCAAGAAAACCAGAAGGTACAAATGCAACTCGAAAATCAGAGGGTGCACACAATTTGAATGGTGATGGCGATGCTGTACCTCTTAAGTTCTATGTTAGAAAGAAAACAAAGAAATGGAGTCAAGCTACTGAAGAACGCCATACTTGCTCTCCTTCCAAATTGAAAAAGGGATCTGTATTACTCCATGGAAACAAGCCAACCATCATTTCTAACGAAAGTGAACCATCGATGTCAAAAGTTGTTGAAGAGGAGACTGTTTTACATGGTGGTGTGGCTGAAGCTGAACCCACAAACAGCAATGTTGTTGAAGAAGAGACTGTTCTGCGTGGCGGTGTTGCTGAAGCTGAACCCACAAACAGCAATGTTGTTGAAGAAGAGACTGTTCTGCGTGGCGGTGTGGCTGAAGCTGAACCCACAAACAGCAATGTTGTTGAAGAAGAGACTGCTCTGCGTGGTGGTGTGGCTGATACCGAACCCCAAACCATCGAAGTGGTTGAAAAGGAGACTATTATGCACGGTTGTGTGGCTGATACTGAACCCACAAACATTGAAACGGAAGAAAATAATGAACTGCTGCTTTCCTTCCTGCAAAAACAAGACAAGGAGATGGCAAAGACGGTACAAGATTCGGAAATGAAGTTGTTGCTTTGA 3045 0.4368 MTPRTDDLIATDDDDSDDDRLQEDMAAVARACKFQVDEFPSEEDPLLASGDEIPYEKDPLLAAGDAIVPFTATADSDSDGQSDRECLNRVKSLCQDIDSIPHLPPMTAASDDDEDDLETVRAIFKRFSAYDKGGREAWAGGDQTPSLIAEKDVVQSPISGSSDADQDFLRRLKLLLMPSRRIELSSSFLEVSCNRRTGNALSLKKDPRVQLISSKKSFATKKSKNNNKKVSAMCYGPDENSRVANYKMVLERFPLSLDRKKWSNKEREKLSIGIKQQFQETVYQISVDRMGSECSPGDIIDSFKGLEITPARIRAFLPKVKWDSLAAMHITGRTGSECESRWLNCEDPLINHGSWTGEEDRTPFQCLARYQRSLNSSMINSEWTEEEDAQLCSAVAYFGESNWQSVASVLERRTGTQCSNRWKKSICPVRKGSFTPEEDERLTVAVALFGRKWNQIAKYVPGRIQSQCRERYLNSLDPSLKWGGWTEEEDLRLEAAITKYGYCWSKVAEDVPPRTDSQCRKRWKVICPEQVPLLQEARKRQRSLLARNFVDRESERPALTLNDFIPLQMLVPPSDVDAEKLPRKRKRQSRGLCKEERSKKHGKETELCTGEARGAEPKKERPKRHAKKKSFYPEDVEDIVPEKEKPKRHLKKVRICPEEVQYIAEYSDRVKTSGGGGVPFSAPSNVPKKMRSKRGPKKSQPKEVDNIACSDEAKTCIKSSEKQDEDNVTLACFLRNKSKKKLTKCTKNASKGLSSSRTKIVSKKVQNHIPSGEQDRLSCGIGGTKDLSMQTENDSSRQARKPEGTNATRKSEGAHNLNGDGDAVPLKFYVRKKTKKWSQATEERHTCSPSKLKKGSVLLHGNKPTIISNESEPSMSKVVEEETVLHGGVAEAEPTNSNVVEEETVLRGGVAEAEPTNSNVVEEETVLRGGVAEAEPTNSNVVEEETALRGGVADTEPQTIEVVEKETIMHGCVADTEPTNIETEENNELLLSFLQKQDKEMAKTVQDSEMKLLL 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07235 1014 CDD SANT 485 524 IPR001005 -
Vifa1g07235 1014 MobiDBLite consensus disorder prediction 671 706 - -
Vifa1g07235 1014 SMART sant 379 428 IPR001005 -
Vifa1g07235 1014 SMART sant 258 348 IPR001005 -
Vifa1g07235 1014 SMART sant 481 529 IPR001005 -
Vifa1g07235 1014 SMART sant 430 478 IPR001005 -
Vifa1g07235 1014 ProSiteProfiles Myb-like domain profile. 375 426 IPR001005 -
Vifa1g07235 1014 Gene3D - 427 482 - -
Vifa1g07235 1014 MobiDBLite consensus disorder prediction 577 619 - -
Vifa1g07235 1014 MobiDBLite consensus disorder prediction 576 632 - -
Vifa1g07235 1014 MobiDBLite consensus disorder prediction 749 821 - -
Vifa1g07235 1014 SUPERFAMILY Homeodomain-like 378 472 IPR009057 -
Vifa1g07235 1014 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 477 531 IPR017930 -
Vifa1g07235 1014 SUPERFAMILY Homeodomain-like 456 527 IPR009057 -
Vifa1g07235 1014 CDD SANT 433 476 IPR001005 -
Vifa1g07235 1014 SUPERFAMILY Homeodomain-like 327 361 IPR009057 -
Vifa1g07235 1014 Pfam Myb-like DNA-binding domain 431 474 IPR001005 -
Vifa1g07235 1014 Pfam Myb-like DNA-binding domain 484 524 IPR001005 -
Vifa1g07235 1014 Pfam Myb-like DNA-binding domain 381 424 IPR001005 -
Vifa1g07235 1014 Gene3D - 483 528 - -
Vifa1g07235 1014 ProSiteProfiles Myb-like domain profile. 477 527 IPR001005 -
Vifa1g07235 1014 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 361 968 - -
Vifa1g07235 1014 Gene3D - 372 425 - -
Vifa1g07235 1014 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 383 424 IPR017930 -
Vifa1g07235 1014 ProSiteProfiles Myb-like domain profile. 430 476 IPR001005 -
Vifa1g07235 1014 MobiDBLite consensus disorder prediction 749 773 - -
Vifa1g07235 1014 CDD SANT 382 424 IPR001005 -
Vifa1g07235 1014 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 429 476 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07235 Vifa-Chr1 1116876429 1116883571 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07235 189 596 MYB-Related Transcription Factor Family AT3G18100 47.109 2.23e-129 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g07235 Myb_DNA-binding 7.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07235 K09422 - gmx:778073 741.88