Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07233 ATGGATGAAGAGGTTCCGCCGGTGCAAGATGAAGAGGACGAGAAGATGGCTGTCAAAAGGCACTTAAATGTTGTTTTTATTGGTCACGTGGATGCTGGTAAATCAACAACAGGAGGTCAGATACTTTTCCTCAGTGGTCAGGTCGATGAAAGGACTATCCAAAAATACGAGAAAGAAGCCAAGGAAAAAAGTAGAGAAAGCTGGTATATGGCTTACATAATGGACACGAATGATGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACATCAAGGTATATGGCTTACATAATGGACACGAATGATGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACATCAAGGTATATGGCTTACATAATGGACACGAATGATGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACATCAAGGTATATGGCTTACATAATGGACACGAATGATGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACATCAAGGTATATGGCTTACATAATGGACACGAATGATGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACATCAAGGTTTACGATTTTGGATGCACCTGTGGATATGAAAAAGGTGGTCAAACCCGTGAACATGTTCAGCTAG 750 0.4427 MDEEVPPVQDEEDEKMAVKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKEKSRESWYMAYIMDTNDEERAKGKTVEVGRAHFETETSRYMAYIMDTNDEERAKGKTVEVGRAHFETETSRYMAYIMDTNDEERAKGKTVEVGRAHFETETSRYMAYIMDTNDEERAKGKTVEVGRAHFETETSRYMAYIMDTNDEERAKGKTVEVGRAHFETETSRFTILDAPVDMKKVVKPVNMFS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07233 249 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 75 90 IPR031157 -
Vifa1g07233 249 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 203 218 IPR031157 -
Vifa1g07233 249 Gene3D - 191 244 IPR027417 -
Vifa1g07233 249 Gene3D - 8 103 IPR027417 -
Vifa1g07233 249 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 171 186 IPR031157 -
Vifa1g07233 249 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 139 154 IPR031157 -
Vifa1g07233 249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 235 IPR027417 -
Vifa1g07233 249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 99 IPR027417 -
Vifa1g07233 249 PANTHER TRANSLATION FACTOR 195 235 - -
Vifa1g07233 249 Pfam Elongation factor Tu GTP binding domain 19 108 IPR000795 GO:0003924|GO:0005525
Vifa1g07233 249 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 107 122 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07233 Vifa-Chr1 1116364677 1116369882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07233 19 107 Eukaryotic Initiation Factors Gene Family AT1G07930 40.449 5.29e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07233 K03267 - gmx:100784412 181.415