Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07232 ATGACTGTTTTCTTGGTTTCTTGCTATCTAGATGAAGAGGTTCCGCCGGTGCAAGATGAAGAGGACGAGAAGATGGCTGTCAAAAGGCACTTAAATGTTGTTTTTATTGGTCACGTGGATGCTGGTAAATCAACAACAGGAGGTCAGATACTTTTCCTCAGTGGTCAGGTCGATGAAAGGACTATCCAAAAATACGAGAAAGAAGCCAAGGAAAAAAGTAGAGAAAGCTGGTATATGGCTTACATAATGGACACGAATGATGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACATCAAGGTATATGGCTTACATAATGGACACGAATGATGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACATCAAGGTATATGGCTTACATAATGGACACGAATGATGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACATCAAGGTATATGGCTTACATAATGGACACGAATGATGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACATCAAGGTATATGGCTTACATAATGGACACGAATGATGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACATCAAGGTTTACGATTTTGGATGCACCTGTGGATATGAAAAAGGTGGTCAAACCCGTGAACATGTTCAGCTAG 777 0.4389 MTVFLVSCYLDEEVPPVQDEEDEKMAVKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKEKSRESWYMAYIMDTNDEERAKGKTVEVGRAHFETETSRYMAYIMDTNDEERAKGKTVEVGRAHFETETSRYMAYIMDTNDEERAKGKTVEVGRAHFETETSRYMAYIMDTNDEERAKGKTVEVGRAHFETETSRYMAYIMDTNDEERAKGKTVEVGRAHFETETSRFTILDAPVDMKKVVKPVNMFS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07232 258 PANTHER TRANSLATION FACTOR 206 244 - -
Vifa1g07232 258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 109 IPR027417 -
Vifa1g07232 258 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 180 195 IPR031157 -
Vifa1g07232 258 Gene3D - 17 112 IPR027417 -
Vifa1g07232 258 Gene3D - 200 253 IPR027417 -
Vifa1g07232 258 Pfam Elongation factor Tu GTP binding domain 28 117 IPR000795 GO:0003924|GO:0005525
Vifa1g07232 258 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 148 163 IPR031157 -
Vifa1g07232 258 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 212 227 IPR031157 -
Vifa1g07232 258 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 116 131 IPR031157 -
Vifa1g07232 258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 244 IPR027417 -
Vifa1g07232 258 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 84 99 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07232 Vifa-Chr1 1116364677 1116369554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07232 28 116 Eukaryotic Initiation Factors Gene Family AT1G07930 40.449 7.60e-18 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07232 K03267 - gmx:100784412 181.415