Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07230 ATGTTTTTTGTCCTGATCTCAGCAAATCCAATACTAGCTGTAACTGAGTTTGTTGCTCAGCTGACAATCCTTGAATTGCTAGACAATGCAATTTTTACTGCTGGCTACAAGGCTATCCTGCATGCCCACTATGTAGTTGAAGAATGTGAGGTTACTGAGCTCTTGCATCAATGTGATCCAAAGACAAAACAGTTTATGAAAAATAAAGTCCTCTTTGTGAAGAATGGTGCAGTTGTTGATTGTCGAATTCAAGTTAGTAACTCCATATGCATCGAGAAATTCTCTGACTTTCGACAACTTGGGAGATTCACTCTTCGCACTGAAGGAAAAACTGTTGCCTTTGGAAAAGTCATGGGTTTTTAA 363 0.3884 MFFVLISANPILAVTEFVAQLTILELLDNAIFTAGYKAILHAHYVVEECEVTELLHQCDPKTKQFMKNKVLFVKNGAVVDCRIQVSNSICIEKFSDFRQLGRFTLRTEGKTVAFGKVMGF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07230 120 Gene3D Translation factors 13 120 - -
Vifa1g07230 120 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 14 119 IPR009001 -
Vifa1g07230 120 Pfam Elongation factor Tu C-terminal domain 11 118 IPR004160 -
Vifa1g07230 120 FunFam Putative translation elongation/initiation factor family protein 12 120 - -
Vifa1g07230 120 PANTHER TRANSLATION FACTOR 5 118 - -
Vifa1g07230 120 CDD eRF3_C_III 13 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07230 Vifa-Chr1 1116275175 1116275933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07230 20 117 Eukaryotic Initiation Factors Gene Family AT5G10630 37.000 2.80e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07230 K03267 - gmx:100784412 184.111