Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07223 ATGGCGTCCAAGTCTCCGCCTCCGCCTTCCCGGACTTCCTCTTCTAGATCCGAGCCTCCTCTCGATCCTTCCACATCGAAAATGGTGGATACCGGTCCTGCAGTTAAAGAGGTGTTATCGGTTATTGAATCTTTGAAGAAACAAGTTGCTGCGAAACGGATTGTTTCGGTCAAGAATAGAGTGGAGGAGAATAGACAGAAGCTGGCTGGTATTACTAACCAGCTCTGGAAATCGGCAGCGGAGAGAAAGACGTGTGACGTTGCGGATAATGATAAAAATCTGGATCTGTTGACTAAAAGGCAACAAGAAGCGATTGATATGCATAATGGTGTTTGTGCTGGTAATGATGATGGCGAGAGTAATGGTAATCATGGAGATGACCATGGATCTACGGCAGTTCTTCTAGGATCTAATGTTGCTGTAAAGAATGCTGTTCGGCCTATCAAATTACCGGAAGTAAGAAGATTGCCTCCTTACACTACATGGATTTTTCTGGACAGAAATCAAAGAATGACAGAGGATCAATCGGTTTTAGGTCGGAGGCGAATTTATTATGATCAAAATGGTGGTGAAGCACTTATTTGCAGTGACAGTGAGGAGGAACTCGTTGATGAAGAAGAGGAAAAAAGAGAATTTGTAGAACCAGAAGATTTTATACTTCGCATGACTGTCAGAGAATTTGGTTTATCTGAGGCTGTTTTGGAGTCACTGGCTCAGTGTTTTTCTAGAAAAACTAGCGACATTAAGGCCAGATATGAAACTTTTTGCAATGAAGACAATGCTGCCGGGGATTCTAAAAATGGAGATGCACAAGATAATTCTCAAAGTGACAATTCTTTTCTAGAAAAGGATCTTGAAGCAGCTCTTGACTCTTTTGACAACCTCTTTTGCCGCCGATGTCGTGTTTTTGATTGCAGATTACATGGATGCTCCCAGGATCTTGTATTTCCGGCTGAGAGGCAACCTCCGTGGAGTCCTCCTAATACTGAAAATGCACCATGTGGGCCGAATTGTTTCAGATCGGTACTTAAGGCAGAAAAAATGCCGAAAGTCACATCTTCTACTCAGACTGATGTTGAAGACAAATCCTCTGGCAGTGTTCTATCTAGGAAAAAGTCTTCTGGTAGAAGGCGAATAAAATGCAGCCAAAGTGAAAGTGCTTCATCTAATGCTAAGAACATATCTGAGAGTAGTGACTCTGAGAATGGTCCTGGACGGGATGCTATTTCAGCTTCCCACTCAGCTCCACCTAAAGCTAAGCCAGTAGGGAAAAGTGGAAAAGGTAAGAGAAACAGTAAACGAGTGGCAGAACGCGTTCTAGTTTGCATGCAGAAACGGCATAAGAAAACAGTAGCTTCTGATTCTGATTCCATTAGTGAAGCTCCTGATCGCCCATTGAATGATTTGGTTTCTGAACCACATGTCATGAGTGGGGAAGACAACACAAGGAAAGAAGAGTTTGTAGATGAAAACATTTCTAAACAAGAAATGACAGATAATAAATCTTGGAAACCTCTTGAAAAAGGGCTTTTAGAAAAAGGAATGGAGATTTTTGGCAAAAACAGCTGCTTAATAGCCAGGAATCTCTTTAATGGTCTAAAGACATGTTGGGATGTTTTCCGGTACATAAATTGTGAAGAAGGGAAGTTGTCTGGTTCTACTGGGGATACCGTGAATTCTCTTGTGGAAGGCTATTCCAAGGGTAATAATGATGTGAGAAGAAGATCAAAATTTTTACGTAGAAGAGGAAAAGTCCGTCGTTTAAAGTATACCTGGAAATCCGCTGCTTATCATTCAATCAGGAAAAGGATTACAGAGAGAAAGGATCAGCCCTGCCGACAGTACAACCCATGTGGATGCCAATCAGCTTGTGGAAAGGAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGATGTCCCAAGAGTTGTAAAAACCGATTTCGTGGCTGTCATTGTGCAAAGAGTCAATGCCGAAGTCGTCAATGTCCATGCTTTGCTGCAGATAGGGAATGTGATCCGGACGTTTGTAGGAACTGTTGGGTCAGCAGCTGTGGCGATGGCACTCTTGGGATTCCTAGTCAAAGAGGGGATAATTATGAATGTAGAAACATGAAGCTTCTTCTCAAACAGCAGCAAAAGGTTCTTCTTGGACGGTCTGATGTGTCTGGCTGGGGAGCATTCTTAAAGAATAGCGTTGGTAAGCATGAATACCTCGGAGAGTACACTGGAGAGTTAATTTCTCATAGGGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATCTGAATGATCAGTTTGTTCTTGATGCATATCGAAAGGGTGATAAATTAAAGTTCGCTAACCACTCGCCTGTTCCAAATTGTTACGCAAAGGTTATTATGGTTGCTGGAGATCATAGGGTAGGAATATTTGCCAAAGAGCGGATTAATGCTGGGGAGGAGCTGTTTTATGATTACCGTTATGAACCCGATAGAGCTCCGGTTTGGGCTCGGAAACCAGAGGCACCTGGATCGAAGAAAGAAGATGGCGCTCCTTCAAGTGGTCGGGCAAAGAAGCTTGCTTAA 2598 0.4273 MASKSPPPPSRTSSSRSEPPLDPSTSKMVDTGPAVKEVLSVIESLKKQVAAKRIVSVKNRVEENRQKLAGITNQLWKSAAERKTCDVADNDKNLDLLTKRQQEAIDMHNGVCAGNDDGESNGNHGDDHGSTAVLLGSNVAVKNAVRPIKLPEVRRLPPYTTWIFLDRNQRMTEDQSVLGRRRIYYDQNGGEALICSDSEEELVDEEEEKREFVEPEDFILRMTVREFGLSEAVLESLAQCFSRKTSDIKARYETFCNEDNAAGDSKNGDAQDNSQSDNSFLEKDLEAALDSFDNLFCRRCRVFDCRLHGCSQDLVFPAERQPPWSPPNTENAPCGPNCFRSVLKAEKMPKVTSSTQTDVEDKSSGSVLSRKKSSGRRRIKCSQSESASSNAKNISESSDSENGPGRDAISASHSAPPKAKPVGKSGKGKRNSKRVAERVLVCMQKRHKKTVASDSDSISEAPDRPLNDLVSEPHVMSGEDNTRKEEFVDENISKQEMTDNKSWKPLEKGLLEKGMEIFGKNSCLIARNLFNGLKTCWDVFRYINCEEGKLSGSTGDTVNSLVEGYSKGNNDVRRRSKFLRRRGKVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQSACGKECPCLQNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSSCGDGTLGIPSQRGDNYECRNMKLLLKQQQKVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPVPNCYAKVIMVAGDHRVGIFAKERINAGEELFYDYRYEPDRAPVWARKPEAPGSKKEDGAPSSGRAKKLA 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07223 865 FunFam Putative histone-lysine N-methyltransferase EZH2 615 833 - -
Vifa1g07223 865 MobiDBLite consensus disorder prediction 840 858 - -
Vifa1g07223 865 MobiDBLite consensus disorder prediction 380 407 - -
Vifa1g07223 865 CDD SET_EZH 716 832 - -
Vifa1g07223 865 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 33 863 IPR045318 GO:0006338|GO:0042054
Vifa1g07223 865 MobiDBLite consensus disorder prediction 349 482 - -
Vifa1g07223 865 SMART set_7 716 837 IPR001214 GO:0005515
Vifa1g07223 865 MobiDBLite consensus disorder prediction 1 32 - -
Vifa1g07223 865 ProSiteProfiles CXC domain profile. 601 701 IPR026489 -
Vifa1g07223 865 MobiDBLite consensus disorder prediction 840 865 - -
Vifa1g07223 865 MobiDBLite consensus disorder prediction 1 24 - -
Vifa1g07223 865 Gene3D SET domain 615 833 IPR046341 -
Vifa1g07223 865 MobiDBLite consensus disorder prediction 430 454 - -
Vifa1g07223 865 SUPERFAMILY SET domain 589 836 IPR046341 -
Vifa1g07223 865 MobiDBLite consensus disorder prediction 349 363 - -
Vifa1g07223 865 Pfam CXC domain 653 684 IPR041355 -
Vifa1g07223 865 ProSiteProfiles SET domain profile. 716 831 IPR001214 GO:0005515
Vifa1g07223 865 Pfam SET domain 727 830 IPR001214 GO:0005515
Vifa1g07223 865 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 865 IPR025778 GO:0031519
Vifa1g07223 865 SMART CXC_2 649 686 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07223 Vifa-Chr1 1115630198 1115637117 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07223 705 834 C2H2 Transcription Factor Family AT2G23740 27.891 6.47e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g07223 SET 2.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07223 - K11430 gmx:100809840 1440.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07223 1 1115630198 1115637117 Vifa1g07223 1 1115630198 1115637117 ECH