Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07219 ATGACAGAATTAGATCCGTCTAAGAAAGTAGCTGATAGGTATCTCAAACGTGAGGTTCTTGGTGAAGGTACCTATGGTGTCGTTTACAAAGCCATTGATACCCAGACAGGACAGACGGTTGCTATTAAGAAGATTAGGATTGGAAAGCAGAAAGAAGGGGTTAATTTTACAGCTCTTAGGGAAATCAAATTGCTTAAAGAGCTCAATGATCCTAATATAATTGAGTTGATTGATTGCTTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATAAGAGACCGGAATATTTTCCTTTCACCGGGTGATATCAAATCTTACCTTCAAATGACGTTTAAAGGTCTTGCTCATTGTCACAAAAAATGGATATTGCATAGGGATATGAAACCAAATAATTTGTTGATAGGACCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATATTTGGAAGCCCGGATCGCAGGTTCACTCATCAGGTGTTTGCACGGTGGTATAGAGCACCTGAGCTATTATTTGGTACTAAGCAGTATGGCCCAGGAGTAGATGTTTGGGCTGCAGCCTGTATATTTGCTGAGCTTCTTCTTCGCCGACCCTTTTTGCAGGGTTCAAGTGATATGGACCAATTGGGAAAGATTTTTGCAGCATTTGGAACTCCATCTCCTTCTCAATGGTCTGATATGGTATATCTTCCTGATTATGTTGAATATCAATATGTGCCTGCCCCTCCTCTGCGCTCTTTATTTCCAATGGCAAGTGAGGATGCTTTAGACTTGTTGTCTAAGATGTTTACATATGACCCAAAGGAACGAATTTCAGTGCAGCAGGCATTAGAACACAGATACTTTACTTGTCCTCCTCCGCCCACAGATCCAGATAAGCTTCCAAGACCTGCCCCTAAGAAGGAAATTAAGGAATCGGATTTGAATCCACGTGAGGGTCCCACAGTCTTATCACCTCCTAGAAAGACTAGGAGAGTAATGCCAGGGCGTGATGGACTTGAAGGAAGTTCATTGCAAGGAGACAAGGTTGATGATACTCATTCTAACTTGAAACAGGCCGCTGGTGATAATATAGGGAAGAGTGATCCCGCACCAATGTCACTAGATTTTTCTATCTTTGGATTAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACAGATCACATTTAAAAAGAAAATTAGATCTAGAATTCCAGTAA 1239 0.4116 MTELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRIGKQKEGVNFTALREIKLLKELNDPNIIELIDCFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTFKGLAHCHKKWILHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDMDQLGKIFAAFGTPSPSQWSDMVYLPDYVEYQYVPAPPLRSLFPMASEDALDLLSKMFTYDPKERISVQQALEHRYFTCPPPPTDPDKLPRPAPKKEIKESDLNPREGPTVLSPPRKTRRVMPGRDGLEGSSLQGDKVDDTHSNLKQAAGDNIGKSDPAPMSLDFSIFGLKPPNRPTINSADRSHLKRKLDLEFQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07219 412 MobiDBLite consensus disorder prediction 293 412 - -
Vifa1g07219 412 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Vifa1g07219 412 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07219 412 MobiDBLite consensus disorder prediction 398 412 - -
Vifa1g07219 412 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07219 412 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Vifa1g07219 412 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07219 412 ProSitePatterns Protein kinases ATP-binding region signature. 20 49 IPR017441 GO:0005524
Vifa1g07219 412 SUPERFAMILY Protein kinase-like (PK-like) 10 300 IPR011009 -
Vifa1g07219 412 MobiDBLite consensus disorder prediction 306 321 - -
Vifa1g07219 412 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Vifa1g07219 412 PANTHER CELL DIVISION PROTEIN KINASE 12 298 - -
Vifa1g07219 412 FunFam Cyclin-dependent kinase D-1 5 94 - -
Vifa1g07219 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vifa1g07219 412 CDD STKc_CDK7 13 295 IPR037770 GO:0005675|GO:0008353|GO:0070985
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07219 Vifa-Chr1 1115599524 1115604565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07219 4 411 Core Cell Cycle Gene Families AT1G73690 74.265 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Vifa1g07219 Pkinase 3.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07219 K02202 - gmx:100814263 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07219 1 1115599524 1115604565 Vifa1g07219 1 1115599524 1115604565 ECH