Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07217 ATGTCCCACTTTGACAAAAACCTCTCTTCCTCTTCTTCACAAGACGATATCTCCCTTTTTCTCCATCAAATTCTCCTCCGTTCTTCTTCTTCTTCATCTTCCTCTTCTCATCCCATGCCTGGATCCATCCTCTCAAACCCACTTCAACATGCAAATATCTCACCTCTTCATCCCACTGCCAGACCAAACCCCTCTGGAGGAGGACTCAGTGGTAATGACACTGATGAATATGACTGTGAAAGTGAGGAGGGTATTGAAGTATTGACAGAAGAAGCTCCAACAAAGACTGTTGGTTCTAGGAGTTCTTCAAAGAGAAGTAGAGCAGCAGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATCAATGAGAAAATGAAGGCCTTACAGAATCTAATACCTAATTCTAACAAGACTGATAAGGCTTCAATGCTAGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTTCAAGTACAGATGTTGTCATTGAAAAATGGATTAAGTTTGCATCCTATGTGCTATCCCGAAGGCTTGCAGCCTCTGTCACTGTCTCGGTTGGGCATGGAATTGAGTGACGGAAACCGGTCTACCCCTTTAAACATGACATCTACTCTGCCTCATCCCCAAGACAACAACTCTTTGCTCTATGCATCCAATCTTCCTAACAAAAACACATTAACAAGTCAGTCATCAATGCCCTCCTATCCTACATATGTTAACAATGCAGAAACATCTTTTGCGGCGGAATCCCGAATCCCGTCACATAAAAGACCTCTTCAACAAACATCCGAGGCGGTACGCGGTGAAGACTTGTTGCAGAACCAGCAATCAAATGCAATCTATGCTGCTACCAATCTATTACGTGGTTCTCAAGGTTTCGAAGAATTTGAGTCAGGCACGATGGTTGCACCTTCAACTAACAACTCTTTGCAAACATGTATCGCGGGAAGAGATCAGTCAGGTGTGATCATGAGAAGTAGCGAGCCAAATGCTATATTCACGTCGCAATTAAGTAGCTAA 1026 0.4288 MSHFDKNLSSSSSQDDISLFLHQILLRSSSSSSSSSHPMPGSILSNPLQHANISPLHPTARPNPSGGGLSGNDTDEYDCESEEGIEVLTEEAPTKTVGSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLKNGLSLHPMCYPEGLQPLSLSRLGMELSDGNRSTPLNMTSTLPHPQDNNSLLYASNLPNKNTLTSQSSMPSYPTYVNNAETSFAAESRIPSHKRPLQQTSEAVRGEDLLQNQQSNAIYAATNLLRGSQGFEEFESGTMVAPSTNNSLQTCIAGRDQSGVIMRSSEPNAIFTSQLSS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07217 341 CDD bHLH_AtPIF_like 108 169 IPR047265 -
Vifa1g07217 341 MobiDBLite consensus disorder prediction 28 119 - -
Vifa1g07217 341 MobiDBLite consensus disorder prediction 105 119 - -
Vifa1g07217 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 156 IPR011598 GO:0046983
Vifa1g07217 341 MobiDBLite consensus disorder prediction 28 70 - -
Vifa1g07217 341 FunFam Basic helix-loop-helix transcription factor 102 165 - -
Vifa1g07217 341 Coils Coil 146 166 - -
Vifa1g07217 341 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 10 283 IPR031066 -
Vifa1g07217 341 Pfam Helix-loop-helix DNA-binding domain 111 157 IPR011598 GO:0046983
Vifa1g07217 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 167 IPR036638 GO:0046983
Vifa1g07217 341 Gene3D - 102 166 IPR036638 GO:0046983
Vifa1g07217 341 SMART finulus 113 162 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07217 Vifa-Chr1 1115144864 1115146915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07217 72 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 53.125 4.78e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g07217 HLH 3.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07217 - - gmx:100793754 374.4