Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07212 ATGGCGGACGAAGAAGGTTCAAGCAGGAAGCGACGTGCCACAAGAGAACCCAAATCTACTTCACACAGCCAAGCACTAGAACTTCTCAGATCCCGCCGATCCGGGGACCGTCGTTCCGACGCTGCCAAACCTCAAATCAGGTTAGAAAACCCTATCTACGACACAATCCCCGAGGAAGAGTACACCGCCTTAGTCGCCAGCCGCCGTGATCAATCACTCTCGTTCATCGTCGACGATGACGGACTTGGTTACGTCGACGAAGGCGAAGAGGAAGATTGGTCTAAAGCCGGCGTCACTCTCTCCGAAGATGAATCTGACGGTGAATCGGAGAAACCGAAACGGAAGAAGGAGAATCCTCAGAGTAAACGTCCTTCTGCTTCTGCTGTTGCGCTTTCGGCTGCGGCTGCTATGATGGGACCGCAGAGAGTGTCGTCGATGTTCACTTCTGCGGTTTTCAAGAAGAACAGAGATGATAAAGTTGCTGATAGTATTGTTGATGATGTTCTCAAGGAGTTTGCGCCGGATGAGACTGATAGACTCAGCCGGAGAAAACTGCAGCCGAATTTGTCTTCTGTTGCCAATGGAGGATCACGGATTAAACCCTCGGTTGACCCTGTACCTGTACGAAGTTATTCTTCACATCAAAATATCGCGATTGCAAAAGTTGATACTGAATCTGTTATGGTTGATAAGGATTTTAAGGATAAGGCTGATGAATCTAGTTTAGTGTTAGAGCCTAATTGTGAAGATGGGGTGAATGGAAGTCTGGGAAATGAAGAGGCACGAGTGAAGGTGGAACCTAATGACTGTCCTTCTCCGAGTAATGGGAATTTAGTTGAAGAGAAAGTTGCAGAGGTGAAGGAAGCTGAAATGGAAGTTAAACCTGCTCTGAAAAAAGAGGGTTTCGTTTTGAATGCGAAAGTTACAGAAGAGGTGGTGGATCCAAAATTGTGTGCTACTGCTGGTTGGCAGGCTGCAAGGAATAGTGGTGGTGAGATAAAAGTTGCTGATTCGAATAATCAACAACAGTCTGAACTCAAGTTGGAGCCGGAGGGATCATTGCCTTTTTACATGATTGATGCTTATGAGGAGTATTATGGAGCCAATATGGGTACTCTTTATTTGTTTGGGAAGGTCAAAACAGGGAATTCGTATCAGAGTTGCTGTGTTGTTGTGAAGAACATGCAGAGGTGTGTCTATGCCATTCCAAGTACTCCTCTGCGTTCCACTGAGATGATACAGCTTGAGAAATATGTCCAAGAGTCTAAAATTACTCCTGCAGATTTCCGTAAAAAGCTGCAAGATGCAGTATCTGATTCAAAGAAAGAGATAGCAAAACACCTAGTGGATCTGGGTGTTTCTACCTTTAGCATGGCGCCTGTTAAGAGGAATTATGCATTTGAACGGTCTGACATACCTGCAGGTGAAAATTATGTGGTGAAAATAAATTATCCGTTCAAGGATACAGCACTTCCAGTAGACCTCAAAGGAGAAAGTTTCCGTGCTATTCTTGGAGCTCGAAGCAGTGCACTTGAGCTATTTTTGATTAAAAGAAAGATTAAGGGGCCTTCATGGCTACAAGTATCAAACTTTTCCACCTGCTCAGCTTCCCAAAGGGTTAGCTGGTGCAAGTTTGAAGTGACTGTTGACTCTCCTAAAGACATCAGGGTTTCTTCTTCTTCTTCCTCAAAAATCACTCTTGTGACTCCTCCCGTGGTCGTCACGGCAATAAACTTGAAAACTATCATAAACGAAAAACAGAACATAAATGAAGTTGTATCTGCATCTATTGTCAGTTGCAATATGGTTAAGATTGACACTCCTATGCTGGCTTCAGAGTGGAAGAAACCTGGAATGCTGACCCATTTTACTGTTATTCGCAAACCTGAAGGGATTATATTTCCAATGGGATTCAGTAAGGAGGTCACAGATAGAAACTCAAAAGCTGGGTCACAAGTTCTGTGTTTTGAAACCAGTGAGAGAGCTGTGTTAAATCGTCTAATGATTGAATTACACAAGATGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCTCAGGCTTGCAAGGTCCCAAGCAGCTTGTGGTCTAAACTTGGCCGTCTCAACCGTTCCACAATGCCTAAGCTTGATAGAAGAGGCAAAACATTTGGTTTTGGAGCTGATCCTGCTATCATGTCCTGTGTTGCCGGTCGGCTTCTCTGTGATACTTATTTGTGTTCCCGTGACTTATTAAAGGAGGTTAGTTATTCTTTAACTCACCTTGCAAAAACACAGCTGAACCAGTCTCGGAAGGAAGTCGCTCCACATGACATTCCAAAAATGTTCCAATCTGCAAAATCCCTGATGGAGCTAATTGAATATGGTGAAACTGATGCATGGTTGTCTATGGAACTCATGTTTTATTTGAGTGTCCTTCCTCTCACACGCCAGTTGACTAATATAAGTGGAAATCTGTGGGGGAAAACTCTTCAGGGTGCCCGGGCCCAGAGGGTGGAGTATCTTTTGTTGCACGAGTTCCATAAAAAGAAATATATTGTTCCAGACAAGTTTTCAAATAACGCAAAAGAAACAAAGTTGACAAAACGCAGAGTAACTCACGGTGTTGATGGTGGCAACTTTGATGAAGCAGATAACAATAATGCAAACTATCATAATGATGCTTCTGAAAGTGATCATAAGAAAAATAAAAAGGCTTCTTCATATGCTGGAGGGCTGGTTTTAGAGCCAAAAAAGGGTCTATATGACAAATATATATTACTTCTGGATTTCAACAGTCTATACCCATCCATCATTCAGGAATATAATATCTGCTTCACGACTGTTGAAAGATCGTCAGATGGATCTTTTCCTTGTCTTCCATCTAGTAAAACAACTGGAGTCTTGCCAGAGTTGCTGAGAAAGCTTGTTAAGTCGAGACGAGATGTAAAGACATGGATGAAAACTGCGTCTGGTCTTAAACGTCAGCAACTGGACATTAAGCAACAAGCACTGAAGCTTACTGCAAACAGTATGTATGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCAAAGCCGCTGGCTGAGCTCATCACCCTACAAGGAAGGGAGATACTACAAAGCACTGTTGATCTTGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGTGATACCGACTCAATAATGATTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATATCTAAGAAAGTTATTCAAGAGGTCAACAAGAAATATACATGCTTAGAAATTGATCTTGATGGTTTGTATAAGAGGATGCTACTTCTCAAGAAAAAGAAGTATGCAGCTGTTAAGGTGCAGTTTAAGGATGGCATCCCATATGAGGTTATTGAACGCAAAGGTCTTGATATTGTCCGCCGTGACTGGAGCTTATTAGCGAAAGATTTAGGAGATTTTTGCTTGACTCAGATTTTGTCGGGAGGATCATGCGAAGATGTCGTTGAATCAATTCACAACTCTCTCATGAAGGTACAAGAAGAAATGCGGAACGGACAAATAGAATTGGAAAAATTTGTCATCACAAAGACGTTGACTAAACCACCTGAGGCATATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAACAACAAGGTCACACCTCTGGTTGCTCTGTTGGCGATACAATCCCTTATATAATTTGCTGTGAGCAGGGTGGTAGTTCAGGCAGTGCAACGGGAATTGCTCAACGTGCCCGACATCCTGACGAACTTAAACAAGAACAGGGGACATGGCTAATTGACATTGATTACTATTTGTCACAACAGATTCATCCTGTGGTATCACGCCTTTGTGCATCAATTCAGGGCACAAGCCCTGAAAGACTAGCTGATTGTTTAGGGCTTGACACATCAAAGTTTCAACAGAAATCAAGTGAAGCTTTAAAGGATGATCCTACAAGCTCACTCTTGTTTGCTGGTGATGATGAGGAGAGGTATCGGGAATGTGAGTCGTTGGTCTTGTCATGTCCCAGCTGCTCTAGTACATTTGACTGCCCGCCCTTGTTTAAATCAATGTGTATGTTGGGAAATGAAAAGCCAGCCAGCTTAGGCTCAGATGAATCTGACTATAATTTCTGGCGCAAGCTAGGCTGTCCCAAATGCTTGGAAAATGGTGTCGGTAGAATATCTCCTGCAATGATAGCCAATCAGGTCAAGCGGCAAGCAGAGAAGTTTGTTTTAATGTATTATAGAGGTTTACTAATGTGTGATGATGAAACATGTAAGCATACAACGCGAAGTGTCAGCTTTCGTTTGGTTGGTGATTCTGAGCGAGGAACTGTCTGTCCAAATTATCCTCGCTGCAACGGGCATCTTATTAGAAAGTACACTGAAGCCGACTTGTACAAGCAGCTCTCATATTTTTGTCACGTGTTTGATTCCTTTAGCTGTATAGAAAAGATGGAGGCAAAGGCTAGGATACCTATAGAAAAGGAGTTGATCAAACTTAGGCCAGTAGTGGAACTTGCTGCTTCAACAATACAAAAGATCAGAGACCGTTGTGCCTTTGGGTGGGTGAAGCTGCAGGACCTGGTTGTTACAATTTAA 4623 0.4263 MADEEGSSRKRRATREPKSTSHSQALELLRSRRSGDRRSDAAKPQIRLENPIYDTIPEEEYTALVASRRDQSLSFIVDDDGLGYVDEGEEEDWSKAGVTLSEDESDGESEKPKRKKENPQSKRPSASAVALSAAAAMMGPQRVSSMFTSAVFKKNRDDKVADSIVDDVLKEFAPDETDRLSRRKLQPNLSSVANGGSRIKPSVDPVPVRSYSSHQNIAIAKVDTESVMVDKDFKDKADESSLVLEPNCEDGVNGSLGNEEARVKVEPNDCPSPSNGNLVEEKVAEVKEAEMEVKPALKKEGFVLNAKVTEEVVDPKLCATAGWQAARNSGGEIKVADSNNQQQSELKLEPEGSLPFYMIDAYEEYYGANMGTLYLFGKVKTGNSYQSCCVVVKNMQRCVYAIPSTPLRSTEMIQLEKYVQESKITPADFRKKLQDAVSDSKKEIAKHLVDLGVSTFSMAPVKRNYAFERSDIPAGENYVVKINYPFKDTALPVDLKGESFRAILGARSSALELFLIKRKIKGPSWLQVSNFSTCSASQRVSWCKFEVTVDSPKDIRVSSSSSSKITLVTPPVVVTAINLKTIINEKQNINEVVSASIVSCNMVKIDTPMLASEWKKPGMLTHFTVIRKPEGIIFPMGFSKEVTDRNSKAGSQVLCFETSERAVLNRLMIELHKMDSDVLVGHNISGFDLDVLLHRSQACKVPSSLWSKLGRLNRSTMPKLDRRGKTFGFGADPAIMSCVAGRLLCDTYLCSRDLLKEVSYSLTHLAKTQLNQSRKEVAPHDIPKMFQSAKSLMELIEYGETDAWLSMELMFYLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHEFHKKKYIVPDKFSNNAKETKLTKRRVTHGVDGGNFDEADNNNANYHNDASESDHKKNKKASSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPCLPSSKTTGVLPELLRKLVKSRRDVKTWMKTASGLKRQQLDIKQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKATSISKKVIQEVNKKYTCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGIPYEVIERKGLDIVRRDWSLLAKDLGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQIELEKFVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGHTSGCSVGDTIPYIICCEQGGSSGSATGIAQRARHPDELKQEQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDTSKFQQKSSEALKDDPTSSLLFAGDDEERYRECESLVLSCPSCSSTFDCPPLFKSMCMLGNEKPASLGSDESDYNFWRKLGCPKCLENGVGRISPAMIANQVKRQAEKFVLMYYRGLLMCDDETCKHTTRSVSFRLVGDSERGTVCPNYPRCNGHLIRKYTEADLYKQLSYFCHVFDSFSCIEKMEAKARIPIEKELIKLRPVVELAASTIQKIRDRCAFGWVKLQDLVVTI 1540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07212 1540 Gene3D - 356 554 - -
Vifa1g07212 1540 MobiDBLite consensus disorder prediction 80 130 - -
Vifa1g07212 1540 SUPERFAMILY Ribonuclease H-like 351 858 IPR012337 -
Vifa1g07212 1540 Gene3D Helix hairpin bin 970 1021 - -
Vifa1g07212 1540 Gene3D - 396 521 - -
Vifa1g07212 1540 MobiDBLite consensus disorder prediction 29 44 - -
Vifa1g07212 1540 MobiDBLite consensus disorder prediction 1 53 - -
Vifa1g07212 1540 Gene3D - 1136 1322 IPR042087 -
Vifa1g07212 1540 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 16 1539 - -
Vifa1g07212 1540 FunFam DNA polymerase 1331 1526 - -
Vifa1g07212 1540 Pfam DNA Polymerase alpha zinc finger 1333 1536 IPR015088 GO:0003887|GO:0006260
Vifa1g07212 1540 SUPERFAMILY DNA/RNA polymerases 854 1307 IPR043502 -
Vifa1g07212 1540 MobiDBLite consensus disorder prediction 1 18 - -
Vifa1g07212 1540 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Vifa1g07212 1540 Gene3D DNA Polymerase alpha, zinc finger 1332 1526 IPR038256 -
Vifa1g07212 1540 FunFam DNA polymerase 570 884 - -
Vifa1g07212 1540 MobiDBLite consensus disorder prediction 88 121 - -
Vifa1g07212 1540 FunFam DNA polymerase 970 1019 - -
Vifa1g07212 1540 MobiDBLite consensus disorder prediction 868 906 - -
Vifa1g07212 1540 Gene3D - 570 881 IPR036397 GO:0003676
Vifa1g07212 1540 NCBIfam DNA polymerase (pol2) 52 1290 - -
Vifa1g07212 1540 CDD POLBc_alpha 905 1308 IPR045846 GO:0003887|GO:1902975
Vifa1g07212 1540 Gene3D Palm domain of DNA polymerase 911 1116 IPR023211 -
Vifa1g07212 1540 MobiDBLite consensus disorder prediction 175 208 - -
Vifa1g07212 1540 SMART polmehr3 570 1072 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vifa1g07212 1540 PRINTS DNA-directed DNA-polymerase family B signature 1005 1017 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vifa1g07212 1540 PRINTS DNA-directed DNA-polymerase family B signature 1058 1066 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vifa1g07212 1540 PRINTS DNA-directed DNA-polymerase family B signature 929 942 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vifa1g07212 1540 Pfam DNA polymerase family B, exonuclease domain 385 763 IPR006133 -
Vifa1g07212 1540 ProSitePatterns DNA polymerase family B signature. 1060 1068 IPR017964 GO:0000166|GO:0003676
Vifa1g07212 1540 CDD DNA_polB_alpha_exo 570 821 - -
Vifa1g07212 1540 FunFam DNA polymerase 1136 1322 - -
Vifa1g07212 1540 Pfam DNA polymerase family B 829 1292 IPR006134 GO:0000166|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07212 Vifa-Chr1 1114372002 1114383707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07212 1 1538 Core DNA Replication Machinery Family AT5G67100 58.767 0.0 1807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07212 K02320 - gmx:100798779 2179.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07212 1 1114372002 1114383707 Vifa1g07212 1 1114372002 1114383707 ECH