Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07208 ATGCACAACAACTCCACCATGACCGACCAACTCTCCAACCAAACATCCATCTTCGGCCTCCGTCTCTGGGTCGTCCTCGGTGTCTCTGTCGGTGTCGCCATCGTCCTCCTCCTCTTCCTCATCTCCATCTATCTCGCTTCCAAACGCAACAACAACAACAACAACAACAAAATCTCCAAAACCTCCAAAACTTCCATCCCAAATATCTCCAAAGAAATCAAAGAACTCAAACTCGAAATCCCTCCATTCAACAACCCACAACCCGACCCGTTTCCTGAACCCGACCCACTCTCATCCACCGAACAAGAAGAAACTCCCTTGAGTTACAAGAGAATTCAGCTTGAGATAGGAAAAAACCATAGAATCTCTTACCCTGAACAACGTGCTACTTCTCGACCTAGTAATAATAATAATTCTCATGAAAATAGTGGAGAATCTCGACCGTTGGATCAAGTTCCTACTGTCATTCCGCAAGTTTCTCATCTCGGCTGGGGTCATTGGTATACTCTAAGAGAGTTAGAAGATGCTACTAATGCTTTTGCTCCTGATTATGTTATTGGTGAAGGTGGTTACGGAATTGTTTATCATGGTATTTTGAAAGATAACACTCAAATTGCTGTTAAAAATTTGCTTAACAACAGGGGACAAGCTGAGAGAGAGTTCAAGGTTGAGGTTGAAGCTATAGGACGGGTTCGCCATAAGAATTTAGTGAGGTTGCTTGGTTATTGTGCTGAAGGTGCTCATAGGATGCTAGTTTATGAGTTTGTTGATAATGGTAACTTGGAGCAATGGTTACATGGTGATGTTGGCCCGTGTAGTCCTCTAACATGGGAAATTCGAATGAATATTATTCTTGGAACGGCAAAAGGGTTGACTTATCTTCATGAGGGGCTAGAACCGAAAGTTGTTCACCGTGATATTAAATCGAGTAACATTTTGCTTAGTAAGCAGTGGAATTCAAAGGTTTCTGACTTTGGTCTTGCCAAACTCCTTAGCCCTGATAGCAGCTATATTACGACCCGCGTTATGGGAACATTTGGATATGTAGCTCCTGAGTATGCAAGTACTGGAATGTTGAATGAACGAAGTGATGTATATAGTTTTGGAATTCTTATTATGGAAGTGATTACAGGCAGGAATCCAGTTGAATATAGTCGTCCTGCAGAAGAGGTGAATTTAGTTGAGTGGCTGAAGAAGATGGTTGGTAACAGAAATCCCGAGGGAGTGTTGGATCCAAAGCTTCCTGAGAAACCAACTTCGAGAGCACTAAAGCGAGCTCTTCTTGTAGCCTTACGATGCACCGACCCTAATGCACAAAAGCGGCCTAAAATGGGACATGTAATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGGATCGCCGAGCTAGAAGAGAGGCAGCCGGACAGTCACCTTTTACCAGAATAGAGGATAGATCGAAAGAGGAGGCCACTGTATCCGTTGATGATGGTATACTTGAAAACGAGAATTCTATAAGTGAAACAAGTTCAAATCATGAAATACAGAAGCAATAA 1539 0.4269 MHNNSTMTDQLSNQTSIFGLRLWVVLGVSVGVAIVLLLFLISIYLASKRNNNNNNNKISKTSKTSIPNISKEIKELKLEIPPFNNPQPDPFPEPDPLSSTEQEETPLSYKRIQLEIGKNHRISYPEQRATSRPSNNNNSHENSGESRPLDQVPTVIPQVSHLGWGHWYTLRELEDATNAFAPDYVIGEGGYGIVYHGILKDNTQIAVKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEFVDNGNLEQWLHGDVGPCSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWNSKVSDFGLAKLLSPDSSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVITGRNPVEYSRPAEEVNLVEWLKKMVGNRNPEGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEDRRARREAAGQSPFTRIEDRSKEEATVSVDDGILENENSISETSSNHEIQKQ 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07208 512 SMART serkin_6 180 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07208 512 Gene3D Phosphorylase Kinase; domain 1 157 255 - -
Vifa1g07208 512 MobiDBLite consensus disorder prediction 452 489 - -
Vifa1g07208 512 PANTHER OS01G0323000 PROTEIN 1 469 - -
Vifa1g07208 512 Gene3D Transferase(Phosphotransferase) domain 1 256 469 - -
Vifa1g07208 512 MobiDBLite consensus disorder prediction 126 151 - -
Vifa1g07208 512 MobiDBLite consensus disorder prediction 452 512 - -
Vifa1g07208 512 FunFam Probable serine/threonine-protein kinase At1g01540 160 255 - -
Vifa1g07208 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Vifa1g07208 512 SUPERFAMILY Protein kinase-like (PK-like) 155 452 IPR011009 -
Vifa1g07208 512 CDD STKc_IRAK 186 452 - -
Vifa1g07208 512 ProSitePatterns Protein kinases ATP-binding region signature. 186 208 IPR017441 GO:0005524
Vifa1g07208 512 Coils Coil 200 220 - -
Vifa1g07208 512 ProSiteProfiles Protein kinase domain profile. 180 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07208 512 MobiDBLite consensus disorder prediction 126 149 - -
Vifa1g07208 512 MobiDBLite consensus disorder prediction 79 104 - -
Vifa1g07208 512 FunFam Putative receptor-like serine/threonine-protein kinase 256 466 - -
Vifa1g07208 512 MobiDBLite consensus disorder prediction 492 512 - -
Vifa1g07208 512 Pfam Protein kinase domain 185 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07208 Vifa-Chr1 1113156789 1113158940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07208 2 447 Trihelix Transcription Factor Family AT1G68690 36.424 1.83e-85 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vifa1g07208 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07208 - - gmx:100797440 741.495