Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07203 ATGAGCGAATTTGCAGAGACCCACAAGCGCGAAGCTGATTCCGAAATCAAGGAGGAAGTTTCTGCATCGAAGAAGTCAAGGGTTGAATCTTCGGAAGATAATGCTTCAAAGGAAGTATCTTTCCGCATTGAAGCAGACGCGGCTGAGGATAAAGGATTGAGACAAACAATGGAAGATGAATGGGTTGTTCTTCTCGATGCAGCTCGAGATTACCCTGGGAATTTGAGATGTGCTCACTTTGCAATTTATGATGGACATGGGGGCCGGTTAGCTGCAGAATATGCTCAAAAGCATTTGCATGGAAATGTTCTTGCAGCAGGATTACCACGTGAGTTGTTGGATGTAAAGACCGCTAAACGATCTATACTTGATGGTTTTCGTAAAACTGATGAGTCTATTCTTCAAGCAAGTGCTGAAGGCGGATGGCAGGATGGTGCTACAGCTGTATGTGTTTGGGTATTAGGACAAAAAGCTTTTGTCGCAAATGTTGGAGATGCAAAAGCAGTTTTAGCTCGGTCAGTTGTAACCGTTGGATCCGAAGATAACTCAGATGAAGTCCACACTCTCAAGGCCATTGTTTTGACAAGAGAACACAAACCTATATTCCCACAGGAGCGTTCACGCATTCAGAAGGCTGGTGGTATTGTGAGCTCAAATGGACGATTACAAGGGCGTCTTGAAGTATCTAGGGCTTTTGGAGATCGGCAATTCAAAAAGGTGGGTCTTGTTGCAACCCCAGATATCCATTCATTTGACCTTACAGATAGAGATCATTTCATCATACTTGGTTGTGATGGATTGTGGGGGGTATTTGGTCCCAGTGATGCTGTTGATTTTGTTCAGAAGTTGTTGAATGAGGGACTATCTGTAACAGTTGTAAGCCGCCGTCTTATAAGGGAAGCTGTTCGAGAGCGTCGATGCAAAGATAACTGCACTGCAGTTGTCATTGTATTCAAGCGAAATTAA 966 0.4389 MSEFAETHKREADSEIKEEVSASKKSRVESSEDNASKEVSFRIEADAAEDKGLRQTMEDEWVVLLDAARDYPGNLRCAHFAIYDGHGGRLAAEYAQKHLHGNVLAAGLPRELLDVKTAKRSILDGFRKTDESILQASAEGGWQDGATAVCVWVLGQKAFVANVGDAKAVLARSVVTVGSEDNSDEVHTLKAIVLTREHKPIFPQERSRIQKAGGIVSSNGRLQGRLEVSRAFGDRQFKKVGLVATPDIHSFDLTDRDHFIILGCDGLWGVFGPSDAVDFVQKLLNEGLSVTVVSRRLIREAVRERRCKDNCTAVVIVFKRN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07203 321 CDD PP2Cc 48 318 IPR001932 -
Vifa1g07203 321 ProSiteProfiles PPM-type phosphatase domain profile. 44 318 IPR001932 -
Vifa1g07203 321 PANTHER PROTEIN PHOSPHATASE 2C 25 316 IPR015655 GO:0004722|GO:0006470
Vifa1g07203 321 MobiDBLite consensus disorder prediction 1 38 - -
Vifa1g07203 321 SMART PP2C_4 40 316 IPR001932 -
Vifa1g07203 321 FunFam Probable protein phosphatase 2C 67 32 320 - -
Vifa1g07203 321 Gene3D - 22 320 IPR036457 -
Vifa1g07203 321 SUPERFAMILY PP2C-like 40 319 IPR036457 -
Vifa1g07203 321 Pfam Protein phosphatase 2C 48 306 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07203 Vifa-Chr1 1112864669 1112870138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07203 29 270 PP2C-type Phosphatase Gene Family AT1G18030 71.545 3.94e-129 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07203 K17500 - mnt:21396468 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07203 1 1112864669 1112870138 Vifa1g07203 1 1112864669 1112870138 ECH