Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07202 ATGGATTGGGTTCGCGGTCGTTTGCTAGGTAGTGGAAGCTTCACCACCGTCAACTTAGCCACACACACAAAACATTCTGTTAACTTTCCGCCTATCACCGCCGTCAAATCCTCAGAAAACTACACCTCACATTTTCTCCAAAAGGAGAAACATATACTCGATTCTTTAGGTTCGTCTCCACATATTATCAAGTGTTTTGGTCATGATCATACTTTTGAAAACGGAGAAGACTGTTATAATATGTTTCTTGAATATGCTGCCGGTGGAACACTTTCCGATCAGCTCAACAATCACGGTGGTAAATTCTCGGAAACTCTTGTTCGCCGTTACACAAGATCTGTTGTAGAAGGACTTAAAGACGTTCATGAAAACGGATTCGTTCATTGTGACGTGAAGCTAGAAAACATTCTCGTATTCGACAATGGAAATGTTAAGATTTCAGATTTTGGTCTTGCAAAGGAGAAAGGTTTAGAACATGGTGACAAGAAGTTGGAATGTAGAGGAACTCCTATTTTTATGGCGCCGGAGTCGGTTAACGATAGCGTTTATGAATCTCCGGTGGATATTTGGGCTCTTGGTTGCGCCGTCTTGCAGATGATTAGTGGTGAACCAGCATGGAAAATGAGTAGCAAGTCAAATATGTGGTCATTGATGATTCGAATTGGGATCGGAGAAGAATTGCCTTTGATTCCAGATGAATTATCAGAAGAAGGCAAAGATTTTCTTAGAAAGTGTTTTGTTAAAGATCCATCGAAAAGATGGAGTGCTGAGATGCTTTTGAATCACCCTTTTATTTCGGATGATGAAACTGTTTCAAATTTGAAAGAGTTAATACATGAGTCGCTATTGCCATCAATGTCTCCAAGAACTCACTTAGATTTTTCTCAATGGACTTCTTCTATTACGACGACATTATCGACAAAGAGACTCCATCTATCAGTTGTGAATCAAAGACCGTTATATTAA 966 0.3965 MDWVRGRLLGSGSFTTVNLATHTKHSVNFPPITAVKSSENYTSHFLQKEKHILDSLGSSPHIIKCFGHDHTFENGEDCYNMFLEYAAGGTLSDQLNNHGGKFSETLVRRYTRSVVEGLKDVHENGFVHCDVKLENILVFDNGNVKISDFGLAKEKGLEHGDKKLECRGTPIFMAPESVNDSVYESPVDIWALGCAVLQMISGEPAWKMSSKSNMWSLMIRIGIGEELPLIPDELSEEGKDFLRKCFVKDPSKRWSAEMLLNHPFISDDETVSNLKELIHESLLPSMSPRTHLDFSQWTSSITTTLSTKRLHLSVVNQRPLY 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07202 321 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 301 - -
Vifa1g07202 321 Pfam Protein kinase domain 5 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07202 321 ProSiteProfiles Protein kinase domain profile. 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07202 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vifa1g07202 321 CDD STKc_MAPKKK 2 265 - -
Vifa1g07202 321 SMART serkin_6 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07202 321 Gene3D Transferase(Phosphotransferase) domain 1 2 316 - -
Vifa1g07202 321 SUPERFAMILY Protein kinase-like (PK-like) 2 307 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07202 Vifa-Chr1 1112612986 1112613951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07202 1 299 MAP Kinase Kinase Kinase AT3G50310 50.820 1.50e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa1g07202 Pkinase 3.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07202 - - tpra:123904139 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07202 1 1112612986 1112613951 Vifa1g07202 1 1112612986 1112613951 ECH
Vifa1g07202 1 1112612986 1112613951 Vifa4g02618 4 802625656 802626681 PCT