Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07198 ATGTCAAGTGTGGCTGTAAAACTCTACAGCGTATTCTTCAAGTTCCTCTTGAAGCACCATTTACAAAACCGGATTCAAGCCCAACCCGACAATAACTCCAACTCGTTTGGTATCACTTCACGACCCGAAGAATCCGTCGCTAACTCTAACCCTTCTTTTACCGATGGCGTCGCCACCAAGGATATCCACATCGATCCTTTCACTTCTCTCTCTATCCGAATCTTTCTTCCTCACTCCGCTCTTTCTCCTCCCGAGCCTCATTCCAAACCTAACTCCAAACCTAAACAACAAGCTCCCGAACCTGGATTTGTACGGAGAAGTAGCTATGGTCCTCCGTTCAGGGAAGAGAAGCTCCAAGGGAGGAATAGTAACGCTGTTGAGGGTTTGAATTTGATGGGCGCTGGTGTTGAAACTGGTGCCGGTTTGTACCGTGGTTACTCGCCGGCGTTGGATTATCGGCGGAGGAAATTACCGGTGATGTTGCAGTTTCATGGTGGGGGGTGGGTTAGTGGTAGTAATGATTCGGTGGTGAACGATTTGTTTTGTCGGCGGATCGCCAAGCTTTGTGATGTGATTGTCGTTGCGGTTGGGTATAGGTTGGCGCCGGAGAGTAGGTATCCGGCTGCGTTTGAGGATGGGTTGAAGGTGTTGAATTGGTTGGCCAAGCAGGCGAATTTGGCCGAGTGTAGTAAATCTATGGGGGTTGGTGGAGGAAGCCATGGTGGTGATGGTGGTGGGGAGTTTAACAAGGATAATCATAGGCATATTGTTGATTCTTTTGGTGCTTCAGTGGTGGAGCCTTGGTTGGCTAGTCATGGAGATCCAACAAGGGGTAGCGGCGCAACTTGTTGTCCGTTGCATGCTATTTCTAATAATTCTTTACCATTCAACAAATATGCATTTTTGACAACACATAATGCATTTGCCATTGAAGGGGAACCATCTCACACAGGTGTGCCTAGATTTACAGTCAACAATCAAGAACACAGCATCACTCAACAGCTAAATAATGGAGTTCGTGCACTTATGTTAGATACATATGATTTTGATGGAGATGTATGGCTATGTCATTCGTTTAAAGGTCAATGTCATGATGTTACAGCATTTGAACCGGCTATTGATACGTTGAAGGAAATTGAGGCATTTTTATCGGCGAATACAAATGAAATTGTGACAATTATATTGGAAGATTATGTTGAATCTCCAAATGGTTTGACAAAGGTTTTCAGTGATGCTGGTCTTAAGAAGTATTGGTTTCCATTGGCTAGCATGCCAAAAAATGGTGAAAATTGGCCACTAGTTAGTGATTTGGTTGCTAAAAACCAAAGGTATTCATGCTTCAATTTCCAGGCATGCTCTTTGTGGATGTCGTTTGGTGTATATGTAACTGGTGTGCTCTTTCAGACAGCTGCTTTTGTCTCCTTTTTGCTTATTTCTCATGGTTACTGTATAATGTGCGAGCACCTTTCTTTAAATGAACGCCGTTCCACTGTCGCACTTGCATGTGTCTTTTACTTGACTCTAGTTGGTTACAAGGCTTCTGTTCCATACTTCACAGTAAATTTCTTATATGGTCGTTATAATATGCAATCCGATTGA 1599 0.4384 MSSVAVKLYSVFFKFLLKHHLQNRIQAQPDNNSNSFGITSRPEESVANSNPSFTDGVATKDIHIDPFTSLSIRIFLPHSALSPPEPHSKPNSKPKQQAPEPGFVRRSSYGPPFREEKLQGRNSNAVEGLNLMGAGVETGAGLYRGYSPALDYRRRKLPVMLQFHGGGWVSGSNDSVVNDLFCRRIAKLCDVIVVAVGYRLAPESRYPAAFEDGLKVLNWLAKQANLAECSKSMGVGGGSHGGDGGGEFNKDNHRHIVDSFGASVVEPWLASHGDPTRGSGATCCPLHAISNNSLPFNKYAFLTTHNAFAIEGEPSHTGVPRFTVNNQEHSITQQLNNGVRALMLDTYDFDGDVWLCHSFKGQCHDVTAFEPAIDTLKEIEAFLSANTNEIVTIILEDYVESPNGLTKVFSDAGLKKYWFPLASMPKNGENWPLVSDLVAKNQRYSCFNFQACSLWMSFGVYVTGVLFQTAAFVSFLLISHGYCIMCEHLSLNERRSTVALACVFYLTLVGYKASVPYFTVNFLYGRYNMQSD 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07198 532 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 295 403 - -
Vifa1g07198 532 PANTHER UNCHARACTERIZED 270 448 - -
Vifa1g07198 532 SUPERFAMILY PLC-like phosphodiesterases 291 458 IPR017946 GO:0006629|GO:0008081
Vifa1g07198 532 Gene3D Phosphatidylinositol (PI) phosphodiesterase 286 461 IPR017946 GO:0006629|GO:0008081
Vifa1g07198 532 MobiDBLite consensus disorder prediction 27 52 - -
Vifa1g07198 532 Pfam alpha/beta hydrolase fold 160 242 IPR013094 GO:0016787
Vifa1g07198 532 MobiDBLite consensus disorder prediction 81 121 - -
Vifa1g07198 532 SUPERFAMILY alpha/beta-Hydrolases 144 242 IPR029058 -
Vifa1g07198 532 Gene3D alpha/beta hydrolase 10 243 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07198 Vifa-Chr1 1111981071 1111983838 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07198 1 277 Carbohydrate Esterase AT3G27320 60.357 5.09e-101 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07198 - - gmx:100775445 376.326