Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07197 ATGGATGAGGACATTCTGAAATCTTTGGAAAGTGATGAAAGCAGTATGGACATGATGACAATGATGATGCAAATGGAAAAGTTTCCTGATTTCCATGAGCCTTTTTATAGCAACAACAACAATCTCAATCTCAATCTCAATAACATCGAGAATGAGTTCCCTTATGGAAACTCAAATGTAACCTATCATCAACCACTCTCTTATCCTCAACAACCAATGACAATGACTCCATCCCTTCAACACAACGAAGTTCAAATACCATCCGGAAGAATCAACAACGCTTCGTACTCCTCTTACTCCGATAAGAAGAACTCAATGGCTGCCATGAGAGAGATGATATTCCGTATGGCGGTTATGCAACCCATTAATATAGACCCAGAAACAATCAAACCACCAAAGAGAAAGAACGTGAAGATTTCAAAGGATCCACAAAGTGTAGCAGCGAGACACAGAAGAGAAAGAATTAGCGAGAGAATAAGAATCTTGCAGAGATTAGTCCCTGGTGGGACAAAAATGGACACTGCTTCAATGTTAGATGAAGCAATACATTATGTGAAGTTCTTGAAGAAACAAGTTCAAACATTGGAACAAGTTGGAGCAAATAGACCTATGAATGTTGTTGGGTTTCCAGGAATGGTTACTAATGGAAATTTGAACTACTCTTCTTTTCTTAGAGGTTGTTCAACTTCATCACCTTGTCAAAGGGTGGGTCTCACTTCCAAACAAATGCTTAGTTGA 738 0.3889 MDEDILKSLESDESSMDMMTMMMQMEKFPDFHEPFYSNNNNLNLNLNNIENEFPYGNSNVTYHQPLSYPQQPMTMTPSLQHNEVQIPSGRINNASYSSYSDKKNSMAAMREMIFRMAVMQPINIDPETIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANRPMNVVGFPGMVTNGNLNYSSFLRGCSTSSPCQRVGLTSKQMLS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07197 245 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 31 222 IPR045843 GO:0003700|GO:0006355
Vifa1g07197 245 SMART finulus 145 194 IPR011598 GO:0046983
Vifa1g07197 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 198 IPR036638 GO:0046983
Vifa1g07197 245 FunFam BHLH transcription factor 142 205 - -
Vifa1g07197 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Vifa1g07197 245 Pfam Helix-loop-helix DNA-binding domain 149 188 IPR011598 GO:0046983
Vifa1g07197 245 MobiDBLite consensus disorder prediction 128 146 - -
Vifa1g07197 245 Gene3D - 138 205 IPR036638 GO:0046983
Vifa1g07197 245 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07197 Vifa-Chr1 1111841457 1111842194 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07197 25 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 57.979 3.89e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g07197 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07197 - - gmx:100796649 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07197 1 1111841457 1111842194 Vifa1g07197 1 1111841457 1111842194 ECH