Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07195 ATGGATGAGGACATTCTGAAATCTTTGGAAAGTGATGAAAGCAGTATGGACATGATGACAATGATGACGCAAATGGAAAAGTTTCCTGATTTCCATGAGCCTTTTTATAGCAACAACAACAATCTCAATCTCAATCTCAATAACACCGAAAATGAGTTCCATTATGGAAACTCAAATGTAACCTATCATCAACCACTCTCTTATCCTCAACAACCAATGACAATGACTCCATCCCTTCAACACAACGGAGTTCAAATACCATCCGGAAGAATCAACAACGCTCCGTACTCCTCTTACTCCGATAGGAAGAACTCAATGGCTGCGATGAGAGAGATGATATTCCGTATGGCGGTTATGCAACCCATTAATATAGACCCAGAAACAATCAAACCACCAAAGAGAAAGAACGTGAAGATTTCAAAGGATCCACAAAGTGTAGCAGCGAGACACAGAAGAGAAAGAATTAGCGAGAGAATAAGAATCTTGCAGAGATTAGTCCCTGGTGGGACAAAAATGGACACTGCTTCAATGTTAGATGAAGCAATACATTATGTGAAGTTCTTGAAGAAACAAGTTCAAACATTGGAACAAGTTGGAGCAAATAGACCTATGAATGTTGCTGGATTCCAAGGAATGGTTTCTAATGGAAATCTGTACTCTTCTTTTGTCAGAGGTTGTTCAACTTCATCACCTTGTCAAATGATGGGTCCCACTTCCAAACAAATGTTTAGTTGA 735 0.3932 MDEDILKSLESDESSMDMMTMMTQMEKFPDFHEPFYSNNNNLNLNLNNTENEFHYGNSNVTYHQPLSYPQQPMTMTPSLQHNGVQIPSGRINNAPYSSYSDRKNSMAAMREMIFRMAVMQPINIDPETIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANRPMNVAGFQGMVSNGNLYSSFVRGCSTSSPCQMMGPTSKQMFS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07195 244 SMART finulus 145 194 IPR011598 GO:0046983
Vifa1g07195 244 FunFam BHLH transcription factor 142 206 - -
Vifa1g07195 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Vifa1g07195 244 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 31 239 IPR045843 GO:0003700|GO:0006355
Vifa1g07195 244 Pfam Helix-loop-helix DNA-binding domain 149 188 IPR011598 GO:0046983
Vifa1g07195 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 198 IPR036638 GO:0046983
Vifa1g07195 244 Gene3D - 138 206 IPR036638 GO:0046983
Vifa1g07195 244 MobiDBLite consensus disorder prediction 128 151 - -
Vifa1g07195 244 MobiDBLite consensus disorder prediction 125 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07195 Vifa-Chr1 1111208961 1111209695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07195 12 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 56.061 9.36e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g07195 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07195 - - gmx:100796649 224.942