Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07185 ATGGAACAACGAAAGCTTGTGGTGTTGGGTATCCCGTGGGATGTTGACACTGAGGGCTTGAAAGAATACATGAGCAAATATGGTGAACTAGAAGATTGCATTGTCATGAAGGAGCGTTCAACTGGACGATCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCCAAGGAAGTATTGTCAGCTGAACATGTTCTTGGTAATAGGATGCTTGAAGTCAAAGTGGCTACACCAAAGGAGGAGATGAGGGCCCCAGCCAAAAAAGTTACCAGAATTTTTGTGGCCAGGATTCCACAATCAGTAACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGAGATATAACAGATTTGTACATGCCAAAGGATCAAGGCTCAAAGATGCATCGTGGAATTGGTTTTATCACTTTTGAAAATGCAGAATCTGTGGAGATTTTGATGTCAGAAACCCATGAACTCGGAGGTACTGCGGTAGTGGTTGATCGAGCTACACCTAAGGAAGATGACATTAAGCCAACTGGCAGAATGTCACAGGGAGGATATGGTGCATACAATGCATATATTTCTACAGCAACTAGATATGCAGCACTTGGAGCTCCTACTTTGTACGACCATCCTGGCCCAATTTATGGAAGGGGAGAGCCTCGTCGGAGAATTAGCAAAAAGATTTTTGTTGGTCGTCTCCCACCTGAAGCAAATTCTGACGATCTCCGCCAATATTTTGGAAGATTTGGCCATATAGAAGATGTTTACATTCCTAGAGATCCTAAGAGAACAGGTCACAGGGGTTTTGGATTTGTTACCTTTGCTGAAGAAGGTGTAGCAGATCGTGTCTCTCGAAGGTCTCATGAGATCTGTGGACACCAGGTGGCAATAGATTCAGCCACACCTGTTGACGACGCTGGGCCCAGTGAAAATTTTATGATGAGCAGTATGGAACCTTTTGGAGGATATGGTGGTCCAATGCGAAGTTATGGGAGGATGTATGGTGGTTTAGACTACGATGATTGGGGTTATGGAGTTCCCAGTGGGAGGCCATCAAGAGTAGATTATCAAGAACAGCTCGGGAGGCCATCAAGAGCTGATTATCAAGAGCAGCTTGGAAGGCCATCAAGAGCGGATTGGAGGTATAGGCCATACTAG 1152 0.4436 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSAEHVLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVTEATFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFENAESVEILMSETHELGGTAVVVDRATPKEDDIKPTGRMSQGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSDDLRQYFGRFGHIEDVYIPRDPKRTGHRGFGFVTFAEEGVADRVSRRSHEICGHQVAIDSATPVDDAGPSENFMMSSMEPFGGYGGPMRSYGRMYGGLDYDDWGYGVPSGRPSRVDYQEQLGRPSRADYQEQLGRPSRADWRYRPY 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07185 383 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Vifa1g07185 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Vifa1g07185 383 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Vifa1g07185 383 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Vifa1g07185 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Vifa1g07185 383 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Vifa1g07185 383 SUPERFAMILY RNA-binding domain, RBD 223 324 IPR035979 GO:0003676
Vifa1g07185 383 MobiDBLite consensus disorder prediction 346 383 - -
Vifa1g07185 383 SMART rrm1_1 93 164 IPR000504 GO:0003723
Vifa1g07185 383 SMART rrm1_1 5 76 IPR000504 GO:0003723
Vifa1g07185 383 SMART rrm1_1 225 296 IPR000504 GO:0003723
Vifa1g07185 383 Gene3D - 1 84 IPR012677 -
Vifa1g07185 383 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 222 344 - -
Vifa1g07185 383 FunFam RNA-binding family protein isoform 1 221 304 - -
Vifa1g07185 383 Gene3D - 220 304 IPR012677 -
Vifa1g07185 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 281 IPR000504 GO:0003723
Vifa1g07185 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 64 IPR000504 GO:0003723
Vifa1g07185 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 147 IPR000504 GO:0003723
Vifa1g07185 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Vifa1g07185 383 Gene3D - 85 175 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07185 Vifa-Chr1 1108765791 1108770804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07185 5 86 Eukaryotic Initiation Factors Gene Family AT2G23350 34.524 5.09e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07185 K14411 - gmx:100795240 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07185 1 1108765791 1108770804 Vifa1g07185 1 1108765791 1108770804 ECH