Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07157 ATGTCGCAGCGATCGGTGCCGGCGCCGTTTTTGACGAAGACGTATCAGATGGTGGATGATTTTGCGACGAGGGATGTGATATCGTGGAATGAAAGTGGTGAAAGTTTTGTTGTGTGGAAACATGCGGATTTTGCAAGGGATTTGCTTCCGAAATATTTTAAACACAATAATTTCTCCAGCTTTGTTCGCCAGCTCAACACATATGGATTCCGAAAGGTTGTAGCAGATAAATGGGAATTCGCAAACGAAAATTTCAAGCGAGGCCACAAAGAACTTCTCACTGAAATCAAACGCCGCAAAACCGTATCACAACCGTCGTCACAGCCTCCAGAAACCGAAAAAACCAGCGGCCACAACAACTCTCCTTCAAACTCCGACGACAACAACGGAGTAGGATCCACCTCCACAGTACGATCAACCTCTTCCTCAAATTCAAAGAACCCTGGATCAGTAGAAACAACACCTCCACAGTGCGTCAATTTATCGTCCGAGAACGAGAAACTGAAAAAGGAAAACGAGATATTGAGCTGGGAGTTAGCACGTGCGAAGCACACGTGCGATGAGTTGGTGGCTTTTCTAAAAGACCGTTTAAACGTGGGACCCGACCAGATCGATCGCATAATGAAAGAAAAAAAGTGTGAATCGGTTCAAAATGCGGTTGGTGAAGGTGAAGAAAATGGAAGAGATAGTTTGAAACTGTTTGGCGTTTGGTTGAAAGAAGAAAAAAAGTTTACAGAGAAAAGAAAGAGAAATTCTGAGGAACAATTGGGGTTTGGTGGGCCTAGGGCTAAAGTGACAAACAATGTTGTTGACTTTAGTGCTGTCAATGTTGTCAACACGATGAAAAGTGGCAAGATTTGTAACTGA 867 0.4371 MSQRSVPAPFLTKTYQMVDDFATRDVISWNESGESFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVADKWEFANENFKRGHKELLTEIKRRKTVSQPSSQPPETEKTSGHNNSPSNSDDNNGVGSTSTVRSTSSSNSKNPGSVETTPPQCVNLSSENEKLKKENEILSWELARAKHTCDELVAFLKDRLNVGPDQIDRIMKEKKCESVQNAVGEGEENGRDSLKLFGVWLKEEKKFTEKRKRNSEEQLGFGGPRAKVTNNVVDFSAVNVVNTMKSGKICN 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07157 288 MobiDBLite consensus disorder prediction 99 163 - -
Vifa1g07157 288 Gene3D - 2 101 IPR036388 -
Vifa1g07157 288 FunFam Heat stress transcription factor B-4 2 100 - -
Vifa1g07157 288 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Vifa1g07157 288 Coils Coil 158 185 - -
Vifa1g07157 288 MobiDBLite consensus disorder prediction 96 165 - -
Vifa1g07157 288 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g07157 288 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g07157 288 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g07157 288 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 212 IPR027725 -
Vifa1g07157 288 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g07157 288 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g07157 288 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07157 Vifa-Chr1 1104606101 1104607074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07157 2 288 HSF AT4G36990 50.333 2.25e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa1g07157 HSF_DNA-bind 1.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07157 K09419 - gmx:100791543 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07157 1 1104606101 1104607074 Vifa1g07157 1 1104606101 1104607074 ECH
Vifa1g07157 1 1104606101 1104607074 Vifa4g02604 4 795481245 795484076 PCT