Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07148 ATGACCACCAACAACACCACCGCCTCCTATCTACAACTCACCCTTTCCTCACCTCCAAAAAAACCCCAACCCATCCCATGGACCCACCAAGAAACCCTCAACCTCATCCGAGCCTACCAAGAAAAATGGTACTCCCTCAAACGCGGCCCACTCCGCGGCAGCCAATGGGAAGAAGTCGCCGTTGTCGTCGCCGCCCGATGCGGTTACGATTACAGTCACCCTTCTAAAACCGCCCTCCAATGCCGCCACAAGATGGAAAAACTCCGTCAACGTCACCGATCCGAAAAGCACCGCTTCACCGCCACTTCCTCCGCTGCCTCTTCCCGATCCTGGCAGTATTTCCGTCTCATGGACGATCTTGAACGCGGTCCTCTCCCTATCTCCGTTCGAGCTCTTCCTCACAACAACAGCCACGAATATGAGAACAACAACAACAACTATAGCGATGGTGAGAGAGGGAAAAATCAGAGTGTTAGGTCAAGGAATATTCTTCACCAGAAAGCTGATGATGATGGTGCGGAGGAGGAAGAGGAAGGAGGGATGGCAACGGAGTTGACGGCAGAGTTGAGAAGTTTTGCAGAGAGGATAGTTCGATTGGAAAATATGAAGATGGAGATGATGAAGGAAACAGAGAGGTTTAGGTTAGAGATGGAGAATAAGAGGATTCGTATGATACTTGAATCTCAGTGGAGGATTATTGATTCCATTGGAAGGGTTTTTAGATCTTCCTAG 732 0.4973 MTTNNTTASYLQLTLSSPPKKPQPIPWTHQETLNLIRAYQEKWYSLKRGPLRGSQWEEVAVVVAARCGYDYSHPSKTALQCRHKMEKLRQRHRSEKHRFTATSSAASSRSWQYFRLMDDLERGPLPISVRALPHNNSHEYENNNNNYSDGERGKNQSVRSRNILHQKADDDGAEEEEEGGMATELTAELRSFAERIVRLENMKMEMMKETERFRLEMENKRIRMILESQWRIIDSIGRVFRSS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07148 243 MobiDBLite consensus disorder prediction 128 158 - -
Vifa1g07148 243 MobiDBLite consensus disorder prediction 166 185 - -
Vifa1g07148 243 Gene3D - 27 94 - -
Vifa1g07148 243 ProSiteProfiles Myb-like domain profile. 26 89 IPR001005 -
Vifa1g07148 243 MobiDBLite consensus disorder prediction 135 153 - -
Vifa1g07148 243 Coils Coil 182 209 - -
Vifa1g07148 243 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 19 234 IPR044823 -
Vifa1g07148 243 FunFam Trihelix transcription factor ASIL2 27 94 - -
Vifa1g07148 243 Pfam Myb/SANT-like DNA-binding domain 26 120 IPR044822 -
Vifa1g07148 243 SMART 118neu2 34 125 IPR006578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07148 Vifa-Chr1 1103706722 1103707453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07148 27 120 Trihelix Transcription Factor Family AT3G14180 32.979 8.31e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa1g07148 Myb_DNA-bind_4 4.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07148 - - mtr:11405483 324.709