Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07132 ATGCTTTCTCTTGTCGATGCCAGCTTTTGGAGCTTTTGTGGAAGATTTCGGATATTTGTTATAGAGTTTGCTGTATACGAATTTGTTTCCGTTTGGTCCAAAAGCTTCTCCTTTTTTCTCTTCTCGTCGCTGCCCGACATCACCGGCTTCCACCACAACCATGTCTTCTCTTCATTTCAACCTCCATCCACTCCCTCCATCTTCATCTCCACTACTCACCACCACCAACAACATTTCTTCCTTCTCCCCCACTTCCCTCTCCATCTTCTACAACAACCACCACCACCTTCTTCGCTTCAATCTCATCGGGATTTGAAGCCGCAGAATTTGCTTCTCGATCAACAGCAAGGGATTTTGAAGATTGCTGATCTTGGTCTTGGGAGGGCTTTTACCGTCCCGCTTAAGAGTTATACTCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTTTGCTTGGATCTACTACCTACTCTACTAGAGTTGATATCTGGTCTGTTGGATGTATCTTTGGTACGTCATTCTCTCGATTTCAATTCTTTTTTCTACTTCTTCTTGTTGTTGCTGGTGGATTCGCGGCAGTGATGTGTAGCGGAACTCAAATGGAAATACCCTACAAAACATCAGAAGAATCGTCTGGTTCATCATCATCATTTTTGAACCAATTTGTTGCGATTAAGATGCCATTAACACCGAGTCCAACTCCGACTCACAAGAAGGTGAATTTTCTTGTGACTTCACGTTCTGTTGATGCTGCTCCAATTGTGGATAGTGATAGTAACAATCTAGGGAATTTGACCACAAGAGGAAAATCGTCGAGTGCTAGAAGTATTATGCCGAAATTGAACTTTCCGTATAATAGGACTTCATCATCTGATGTTGAAAAGGCGATAAGTTTGGCTCCGGAAAGTCCTTGTGAGAAGCCTTCTGTCTCTGGATCAGGATTAGTGTCTTTGAGTAAGCTGTTTTCTCCTAAGATTTATAGAACTTCTTCGCTACCGGTTGAAGAAATCGGGCGTGTTAATAATGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAAGCCAGGGATCGATAGCTCGCACTCGTTCAGAGCCGGTAGATAGCAAAGAAAAAATCATAAGGAAAATGGATAAGTTTTTCCGCATTATTCCTTCCACCCCAGGTGCAAAGGAAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATATAGAAAATGGCGGTGATGACGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGGATTTGTCTGATTGAGCTATGTGAAGGAGGTGAGACGCTGAAGATGGAATGCAGTTGCGAAGGTGAACTTGCATTGGCTCACCAAGAATGCGCTATCAAGTGGTTCAGTATCAGGGGTAACAAGACATGTGATGTGTGCAAGCAAGAAGTTCAGAATCTCCCTGTCACTCTCTTACGCATCCAAAATGTTCAAACTCAGAATACCGGAGCAAGGTCTTAG 1497 0.4295 MLSLVDASFWSFCGRFRIFVIEFAVYEFVSVWSKSFSFFLFSSLPDITGFHHNHVFSSFQPPSTPSIFISTTHHHQQHFFLLPHFPLHLLQQPPPPSSLQSHRDLKPQNLLLDQQQGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTTYSTRVDIWSVGCIFGTSFSRFQFFFLLLLVVAGGFAAVMCSGTQMEIPYKTSEESSGSSSSFLNQFVAIKMPLTPSPTPTHKKVNFLVTSRSVDAAPIVDSDSNNLGNLTTRGKSSSARSIMPKLNFPYNRTSSSDVEKAISLAPESPCEKPSVSGSGLVSLSKLFSPKIYRTSSLPVEEIGRVNNEFAFGGCLGASPYRSQGSIARTRSEPVDSKEKIIRKMDKFFRIIPSTPGAKEVKEWLKASAEKDIENGGDDGEDIAEEEAVCRICLIELCEGGETLKMECSCEGELALAHQECAIKWFSIRGNKTCDVCKQEVQNLPVTLLRIQNVQTQNTGARS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07132 498 ProSiteProfiles Zinc finger RING-CH-type profile. 417 479 IPR011016 GO:0008270
Vifa1g07132 498 Gene3D Transferase(Phosphotransferase) domain 1 102 178 - -
Vifa1g07132 498 SMART ringv_2 424 473 IPR011016 GO:0008270
Vifa1g07132 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 480 IPR013083 -
Vifa1g07132 498 CDD RING_CH-C4HC3_MARCH 425 473 - -
Vifa1g07132 498 PANTHER OS02G0165000 PROTEIN 201 493 - -
Vifa1g07132 498 Pfam Protein kinase domain 102 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07132 498 ProSiteProfiles Protein kinase domain profile. 1 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07132 498 SUPERFAMILY Protein kinase-like (PK-like) 102 180 IPR011009 -
Vifa1g07132 498 SMART serkin_6 18 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07132 498 Pfam RING-variant domain 425 472 IPR011016 GO:0008270
Vifa1g07132 498 SUPERFAMILY RING/U-box 421 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07132 Vifa-Chr1 1100852835 1100855524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07132 102 181 Core Cell Cycle Gene Families AT2G38620 81.250 1.09e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa1g07132 Pkinase 2.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07132 - - cam:101488558 409.838