Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07127 ATGCTTCCTCAGCAAATGAAGAAAGCCGTTACTAATAACCCTAAAAACCTCGCAAACTTGATCGATCTCGTTAACCTTCCTCCCACTCTCAGAGACTTCGTCGGTCAATCTCAGACTTCTCGATTAACCTGTTTCATGCGTGTTTGGTCCTACGTCAAAACCAACAATCTTCAGGATCCAAATAACAAGAACATGGTAAACTGTGATGAGAAGTTAAAAGGTATTTTACTCGGGAAACCTCGGGTTGAGTTAGCAGAACTTCCAGCACTTATCAAGCTACATTTTCTGAAAGAGCCCAACTTGTTCACATCACATAAAAAGTTTTCATGTGAAGCTGCGGTTGCATGGGAAGCTGGGAAGCCACTGGTGATTGAAGAAGTAGAGGTGGCGCCACCGCAGGCCGGTGAAGTTCGTCTCAAGATACTCTTCACCTCCCTTTGTCACACTGATGTTTACTTCTGGGAAGCTAAGGGTCAGACTCCATTGTTTCCTCGTATTTTTGGTCATGAAGCTGGAGGGATCGTGGAGAGCGTAGGTGAAGGTGTGACTCATCTGAAACCAGGGGATAAAGCCCTGCCTGTATTCACAGGGGAGTGTGGTGAATGTCCACATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTTCTTAGGATCAACACTGACAGAGGTGTCATGCTCAATGATAACAAGTCTAGATTCTCTATCAATGGAGAGCCCATAAACCATTTCGTGGGCACCTCTACATTCAGTGAGTACACAGTGGTTCATGCTGGATGTGTTGCAAAGATCAATCCTGAAGCACCACTTGACAAAGTTTGTATTCTCAGTTGTGGAATATGCAAAGGTCTTGGTGCTACTGTGAATGTTGCAAAACCAAAGCCAGGTTCTTCAGTTGCTATCTTTGGGCTTGGAGCTGTTGGCCTTGATGCTGCTGAAGGTGCAAGGATCTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGCTAAGAAGTTTGGAGTGAATGAGTTCGTGAACCCGAAAGTAGATTAA 1050 0.4457 MLPQQMKKAVTNNPKNLANLIDLVNLPPTLRDFVGQSQTSRLTCFMRVWSYVKTNNLQDPNNKNMVNCDEKLKGILLGKPRVELAELPALIKLHFLKEPNLFTSHKKFSCEAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDKALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSINGEPINHFVGTSTFSEYTVVHAGCVAKINPEAPLDKVCILSCGICKGLGATVNVAKPKPGSSVAIFGLGAVGLDAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKVD 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07127 349 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 168 182 IPR002328 GO:0008270|GO:0016491
Vifa1g07127 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 268 347 IPR036291 -
Vifa1g07127 349 Gene3D - 282 347 - -
Vifa1g07127 349 Pfam Alcohol dehydrogenase GroES-like domain 135 262 IPR013154 -
Vifa1g07127 349 PANTHER ALCOHOL DEHYDROGENASE 106 347 - -
Vifa1g07127 349 Gene3D - 118 281 - -
Vifa1g07127 349 FunFam S-(hydroxymethyl)glutathione dehydrogenase 282 349 - -
Vifa1g07127 349 FunFam alcohol dehydrogenase 1-like isoform X1 118 281 - -
Vifa1g07127 349 Pfam SWIB/MDM2 domain 24 95 IPR003121 -
Vifa1g07127 349 CDD SWIB-MDM2_like 24 95 - -
Vifa1g07127 349 Gene3D SWIB/MDM2 domain 19 102 IPR036885 -
Vifa1g07127 349 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
Vifa1g07127 349 SUPERFAMILY SWIB/MDM2 domain 18 103 IPR036885 -
Vifa1g07127 349 SUPERFAMILY GroES-like 103 285 IPR011032 -
Vifa1g07127 349 SMART swib_2 20 100 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07127 Vifa-Chr1 1100251277 1100253711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07127 136 277 Monolignol Biosynthesis Gene Families AT4G37990 29.371 1.68e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Vifa1g07127 ADH_N 5.7e-23 CL0296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07127 K18857 - gmx:100783858 456.832