Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07115 ATGCACGTGCAACTCAGGAGGGCAAGGAGAAGGACAGATACACAAGACATAGAGTTATCAATGGATATGATGGTTGTGTTCTCCGGCGAAGATGATCGTAATTCCTATAGTGCTATTGTCGAAAGGCTTACGAAAAAGTTGGAACTTCACTATGTTAAGGATCTTGAGGTAGAAACAGTGGTTGTTGGATATCTTGCTAGAGAAAGAAAGGGACACCAAGAAGAGAGCACATATAAAATAATTGGTCTTCTCAACCAATACAAAAGGATTGCATGTATGGAAGAAACTGAGGTTGTTATAGATGATGATCCTGCCATGCCTAATAAGGTGTTTGGAAGAAGCACTTCTTTGAACATCCCTCATGAGTTTCTATGTCCAATAACTCTTGAAATCATGACAGATCCTGTTATTGTTGCAATTGAACTGGGAAATCATAGAGAAGTGATTTAA 450 0.3889 MHVQLRRARRRTDTQDIELSMDMMVVFSGEDDRNSYSAIVERLTKKLELHYVKDLEVETVVVGYLARERKGHQEESTYKIIGLLNQYKRIACMEETEVVIDDDPAMPNKVFGRSTSLNIPHEFLCPITLEIMTDPVIVAIELGNHREVI 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07115 149 SUPERFAMILY RING/U-box 115 139 - -
Vifa1g07115 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 145 IPR013083 -
Vifa1g07115 149 ProSiteProfiles U-box domain profile. 118 149 IPR003613 GO:0004842|GO:0016567
Vifa1g07115 149 Pfam U-box domain 119 139 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07115 Vifa-Chr1 1099059357 1099059915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07115 4 139 U-box Gene Family AT5G42340 54.412 9.56e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07115 - - psat:127127055 232.646