Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g07113 | ATGTCCTCATGCGTCACTATTCTTCGAACATCTCTCATCTTCCAACTTCGAACATCTCTCATCTTCCAACCGATTCACATGAATCTTAGGGTTGAGCTCTTTGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCTGTCTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAGAAGTCTTAATGTAGGTTTTGTTCTCGCAATGACAGCAACTGCTACAACCACAACCTTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGTTCTGATAAAGTCTCCTCCTTTTGCGGATGTTAAAGGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGCTTAAATGGCTGGCAGAGGATATGGACGAGGACGAGGACGCGGCGGATTTCAAAATTATGCACGACCAGAGCCATTTGTACTTTTTCCCGAGGAGAAGGGTCTCTATGGACAATGATAGTTGCCATGATTGTACATTGATCAAGATTGATAGTGTCAATAAACCAGGAATTCTGCTGGAAGTCGTACAAATCCTAACAGACCTTGACTTCATAATCACCAAAGCTTACATATCTTCTGATGGTGGATGGTTTATGGATGGGAGTTATGCCAGATGGTAA | 1014 | 0.4073 | MSSCVTILRTSLIFQLRTSLIFQPIHMNLRVELFVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHRSLNVGFVLAMTATATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRMKDLLVLIKSPPFADVKGIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQLKWLAEDMDEDEDAADFKIMHDQSHLYFFPRRRVSMDNDSCHDCTLIKIDSVNKPGILLEVVQILTDLDFIITKAYISSDGGWFMDGSYARW | 337 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g07113 | 337 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 122 | IPR014001 | - | |
Vifa1g07113 | 337 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 35 | 245 | - | - | |
Vifa1g07113 | 337 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 32 | 246 | IPR027417 | - | |
Vifa1g07113 | 337 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 143 | 314 | IPR001650 | - | |
Vifa1g07113 | 337 | Pfam | Helicase conserved C-terminal domain | 160 | 246 | IPR001650 | - | |
Vifa1g07113 | 337 | Gene3D | - | 130 | 247 | IPR027417 | - | |
Vifa1g07113 | 337 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 59 | 68 | IPR002464 | - | |
Vifa1g07113 | 337 | SUPERFAMILY | ACT-like | 286 | 333 | IPR045865 | - | |
Vifa1g07113 | 337 | Gene3D | - | 11 | 120 | IPR027417 | - | |
Vifa1g07113 | 337 | SMART | helicmild6 | 173 | 247 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g07113 | Vifa-Chr1 | 1098910732 | 1098915755 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g07113 | 163 | 244 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.268 | 1.05e-07 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g07113 | K10730 | - | gmx:100811214 | 336.65 |