Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07113 ATGTCCTCATGCGTCACTATTCTTCGAACATCTCTCATCTTCCAACTTCGAACATCTCTCATCTTCCAACCGATTCACATGAATCTTAGGGTTGAGCTCTTTGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCTGTCTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAGAAGTCTTAATGTAGGTTTTGTTCTCGCAATGACAGCAACTGCTACAACCACAACCTTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGTTCTGATAAAGTCTCCTCCTTTTGCGGATGTTAAAGGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGCTTAAATGGCTGGCAGAGGATATGGACGAGGACGAGGACGCGGCGGATTTCAAAATTATGCACGACCAGAGCCATTTGTACTTTTTCCCGAGGAGAAGGGTCTCTATGGACAATGATAGTTGCCATGATTGTACATTGATCAAGATTGATAGTGTCAATAAACCAGGAATTCTGCTGGAAGTCGTACAAATCCTAACAGACCTTGACTTCATAATCACCAAAGCTTACATATCTTCTGATGGTGGATGGTTTATGGATGGGAGTTATGCCAGATGGTAA 1014 0.4073 MSSCVTILRTSLIFQLRTSLIFQPIHMNLRVELFVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHRSLNVGFVLAMTATATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRMKDLLVLIKSPPFADVKGIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQLKWLAEDMDEDEDAADFKIMHDQSHLYFFPRRRVSMDNDSCHDCTLIKIDSVNKPGILLEVVQILTDLDFIITKAYISSDGGWFMDGSYARW 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07113 337 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 122 IPR014001 -
Vifa1g07113 337 PANTHER DNA HELICASE RECQ FAMILY MEMBER 35 245 - -
Vifa1g07113 337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 246 IPR027417 -
Vifa1g07113 337 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 143 314 IPR001650 -
Vifa1g07113 337 Pfam Helicase conserved C-terminal domain 160 246 IPR001650 -
Vifa1g07113 337 Gene3D - 130 247 IPR027417 -
Vifa1g07113 337 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 59 68 IPR002464 -
Vifa1g07113 337 SUPERFAMILY ACT-like 286 333 IPR045865 -
Vifa1g07113 337 Gene3D - 11 120 IPR027417 -
Vifa1g07113 337 SMART helicmild6 173 247 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07113 Vifa-Chr1 1098910732 1098915755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07113 163 244 Eukaryotic Initiation Factors Gene Family AT3G19760 29.268 1.05e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07113 K10730 - gmx:100811214 336.65