LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g07102	ATGGGTCTCTGCACTTCAAAACCCACTCACTCCTCTCACAACGAAACAAACTCCGTCACAGTTAACGTCACTCCCAAACCTCAAACAAACTCCGTCAATGGCGAAAACCCTAACGAAACCGAAAACGTTAAGAGATCTCCGTTTTTCCCGTTCTACACTCCGAGTCCTGCTCACCAGTTCTTCTCTAAGATGTCTCCGGCCAGGAAATTTTTCAAGCGGCCGCCGTCTCCGGCGAAGCATATAAAGTCGCTTCTTGCCCGGCGGCATGGCTCGGTGAAGCCTAATGAAGCTTCGATACCGGAAGGGGGTGAGGAGGAGGCGGTGGTTTCGCTTGATAAGAATTTCGGATTCTGCAAGCATTTCGGAAGTAAGTATGATGTTGGAGATGAGGTTGGGAGAGGACATTTTGGTTATACCTGTGCTGCTAAGTTGAAGAAAGGAGATCTTAAAGGTCAACAAGTTGCTGTTAAAGTCATTCCTAAAGCCAAGATGACATCTGCTATTGCTATTGAGGATGTGAGAAGGGAAGTGAAAATATTGAAAGCTTTGAATGGACATAAAAATCTAGTTCGATTCCATGATGCTTATGAAGATCATGATAACGTGTATATAGTAATGGAATTGTGTGAAGGTGGAGAGTTGTTGGACAGAATATTATCAAGAGGTGGAAAATACACAGAGGAAGATGCAAAAGCTATCCTTAGACAAATACTGAATGCTGCTGCATTTTGCCATCTACAGGGTGTTGTGCATCGTGATCTTAAACCGGAGAACTTCTTGTTTGCATCCAAGGACGAAAACTCAGAATTAAAGGCCATAGATTTTGGGCTGTCGGATTTTGTTAAACTAGATGAAAGGCTGAATGATATTGTGGGTAGTGCATACTATGTGGCTCCTGAAGTTCTTCATAGAGCTTATAGTACTGAGGCTGATGTCTGGAGCATTGGAGTGATTGCATATATTTTGTTATGTGGCAGCCGTCCATTTTGGGCTCGGACTGAGTCTGGTATCTTTCGTACTGTGTTGAAAGCGGATCCAAGTTTTGACGAACCTCCCTGGCCTTCTCTATCAAATGAGGCAAGGGATTTTGTTAAGAGATTACTTAATAAAGATCCACGGAAAAGAATGAGTGCAGCACAGGCATTAAGTCATCCATGGATAAAACACTATGAGGATACGAAAGTACCTTTGGATATTTTAATATTCAAGCTCATGAAGGCACACATGCGTTCTTCTTCTCTACGAAAAGCTGCTTTAAGGGCTCTGTCCAAGACATTAACTGTGGATGAGCTGATTTATTTGAAGGAGCAGTTTTCACTTTTAGAGCCCAACAAAAATAACACCATTAGCTTGGAAAACATAAAAACGGCCTTTACGGTAAATGCAACAGATGCTATGAAGGAGTCACGCATTGCCGACTTTCTGGCATCACTTAATGCATTGCAATATAGGAGGATGGATTTTGATGAGTTCTGCGCAGCTACGCTTAGTGTTCATCAACTTGAAGCACTTGACCACTGGGAGAAGCGGGCACGATGTGCCTTTGACCTATTTGAAAAGGATGGAAACAAGGCCATAGTCATTGACGAATTAGCTTCGGAACTCGGGCTTGGTCCATCTATACCGGTACATGCTGTTCTTCATGATTGGATTCGTCACACTGATGGGAAATTAAGCTTCATTGGATTTGTGAAATTGTTGCACGGCCCATCAAGAAGTCTTGCAAAGTCTCAATAG	1737	0.4301	MGLCTSKPTHSSHNETNSVTVNVTPKPQTNSVNGENPNETENVKRSPFFPFYTPSPAHQFFSKMSPARKFFKRPPSPAKHIKSLLARRHGSVKPNEASIPEGGEEEAVVSLDKNFGFCKHFGSKYDVGDEVGRGHFGYTCAAKLKKGDLKGQQVAVKVIPKAKMTSAIAIEDVRREVKILKALNGHKNLVRFHDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAILRQILNAAAFCHLQGVVHRDLKPENFLFASKDENSELKAIDFGLSDFVKLDERLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRTVLKADPSFDEPPWPSLSNEARDFVKRLLNKDPRKRMSAAQALSHPWIKHYEDTKVPLDILIFKLMKAHMRSSSLRKAALRALSKTLTVDELIYLKEQFSLLEPNKNNTISLENIKTAFTVNATDAMKESRIADFLASLNALQYRRMDFDEFCAATLSVHQLEALDHWEKRARCAFDLFEKDGNKAIVIDELASELGLGPSIPVHAVLHDWIRHTDGKLSFIGFVKLLHGPSRSLAKSQ	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g07102	578	PANTHER	SERINE/THREONINE-PROTEIN KINASE	111	553	-	-
	Vifa1g07102	578	FunFam	CDPK-related kinase 1	423	496	-	-
	Vifa1g07102	578	ProSitePatterns	Protein kinases ATP-binding region signature.	131	157	IPR017441	GO:0005524
	Vifa1g07102	578	CDD	STKc_CAMK	124	386	-	-
	Vifa1g07102	578	Gene3D	Transferase(Phosphotransferase) domain 1	214	404	-	-
	Vifa1g07102	578	Gene3D	-	405	496	-	-
	Vifa1g07102	578	Gene3D	-	412	566	-	-
	Vifa1g07102	578	SUPERFAMILY	Protein kinase-like (PK-like)	122	416	IPR011009	-
	Vifa1g07102	578	Pfam	Protein kinase domain	125	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g07102	578	Gene3D	Phosphorylase Kinase; domain 1	118	213	-	-
	Vifa1g07102	578	FunFam	Calcium-dependent protein kinase SK5	297	392	-	-
	Vifa1g07102	578	MobiDBLite	consensus disorder prediction	1	42	-	-
	Vifa1g07102	578	SMART	serkin_6	125	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g07102	578	SUPERFAMILY	EF-hand	415	569	IPR011992	-
	Vifa1g07102	578	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	249	261	IPR008271	GO:0004672\|GO:0006468
	Vifa1g07102	578	ProSiteProfiles	Protein kinase domain profile.	125	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g07102	578	FunFam	CDPK-related kinase 3	117	289	-	-
	Vifa1g07102	578	FunFam	CDPK-related kinase 1	118	213	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g07102	Vifa-Chr1	1097012281	1097015602	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g07102	1	578	EF-hand Containing Proteins	AT3G50530	71.361	0.0	906

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Vifa1g07102		Pkinase	6.9e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g07102	K00924		-	gmx:100794177	951.429