Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07099 ATGATTTTCTTTCTAACAACAGGTGTTGTTGGAAGTGCAGTAATGGTGGCATTGCTGACGTGCATCATAATTTGTTATATTAAAGGTAAGTCATCAACACAACAACTGAAATTCGGGTTTAAGACAAAGAATGATAAAAACATTGAAGCATTCTTTAAAGAACATGGAGCTTTGACGCAAAAGGAATATACTTTTGCACAAATAAAGAAAATGACAAATTCATTCAAAATTAAACTTGGTCAAGGGGGTTTTGGTGTTGTGTATAAAGGAAATTTATTCAATGGTTGTCCTGTGGCGGTGAAGATATTGAATGCGTCAAAAAGAAATGGTGAAGAATTTATTAATGAGGTTGCAAGTATTACTAGAACCTCACATGTTAATGTTGTCACTCTTCTTGGATTTTGTTTTCAAGGACGTAAAAAAGCGCTTGTATATGAATTTATGTCTAACGGTTCTCTTGACAAATTTATTTTCAATAAGGGACATGAAACCATTGAATCTTTAAGCTGGGATGATTTGCATCAAATTGCGAAGGGAATAGCTCGTGGGCTAGAGTACTTGCATAGAGGATGCACCACTCGAATTTTACATTTTGACATAAAACCACATAACATTCTTTTGGATGAGAATTTTAATCCCAAGATTTCTGATTTTGGACTTGCAAAGCTCTGCCCTAGAAAAGAGAGCATTATTTCGATGTCGGATCAAAGAGGGACAATGGGATATGTAGCTCCAGAAGTGTGGAATAGACATTTCGGAGGAGTTTCCCATAAGTCAGATGTTTACGGTTATGGAATGATGTTGTTAGAAATGGTGGGTGGAAGGAAAAATATTAATGCTGATGCAAGTAACACAAGTGAGATATACTTTCCTCATTGGGTATATAGTAGGCTTGAGTTTGGAAGTGATTTGAGACCTGATGGAGTAATGGATACAGAAGAAGATGAGATTGCAAGGAGAATGACCATTGTGGGTTTGTGGTGTATTCAAACATTTCCTAATGATAGGCCTACAATGAGTAAAGTGGTTGAAATGTTAGAAGTTAGCATAAATTCATTGAATATACCACCAAAACCATTACTTTCATCTCCTACTAGATCAGTATCAGAGCCTTAA 1116 0.3575 MIFFLTTGVVGSAVMVALLTCIIICYIKGKSSTQQLKFGFKTKNDKNIEAFFKEHGALTQKEYTFAQIKKMTNSFKIKLGQGGFGVVYKGNLFNGCPVAVKILNASKRNGEEFINEVASITRTSHVNVVTLLGFCFQGRKKALVYEFMSNGSLDKFIFNKGHETIESLSWDDLHQIAKGIARGLEYLHRGCTTRILHFDIKPHNILLDENFNPKISDFGLAKLCPRKESIISMSDQRGTMGYVAPEVWNRHFGGVSHKSDVYGYGMMLLEMVGGRKNINADASNTSEIYFPHWVYSRLEFGSDLRPDGVMDTEEDEIARRMTIVGLWCIQTFPNDRPTMSKVVEMLEVSINSLNIPPKPLLSSPTRSVSEP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07099 371 Pfam Protein kinase domain 78 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07099 371 SUPERFAMILY Protein kinase-like (PK-like) 60 348 IPR011009 -
Vifa1g07099 371 ProSiteProfiles Protein kinase domain profile. 73 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07099 371 CDD STKc_IRAK 79 347 - -
Vifa1g07099 371 Gene3D Phosphorylase Kinase; domain 1 33 147 - -
Vifa1g07099 371 ProSitePatterns Protein kinases ATP-binding region signature. 79 101 IPR017441 GO:0005524
Vifa1g07099 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Vifa1g07099 371 FunFam serine/threonine-protein kinase PBS1-like 41 147 - -
Vifa1g07099 371 FunFam PR5-like receptor kinase 148 358 - -
Vifa1g07099 371 Gene3D Transferase(Phosphotransferase) domain 1 148 354 - -
Vifa1g07099 371 PANTHER RUST RESISTANCE KINASE LR10-RELATED 45 363 IPR045874 GO:0004672
Vifa1g07099 371 SMART serkin_6 73 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07099 Vifa-Chr1 1096774297 1096775412 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07099 8 370 Receptor kinase-like Gene Family AT1G66910 50.943 2.74e-126 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa1g07099 Pkinase 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07099 - - psat:127114885 678.707