Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07096 ATGGATAAGAATATCCCTATGAACATAACCATTCAATACACCTCTTTCTTCTTTTACTTGTTATTCATAATAAGCACTTTTTCCCCACAAGTATCCTATTCTCAATCAGTTTATGATTATTCCATTTGCAAGGAACAGTCCTACAACTGTGGTAATCTTTCCAGCATCTCGTATCCATTCTGGGGACATGATCGTCCTTTTCAATGTGGGGCAGGAGCCCCATTTTACCTTGACTGCAACGAAAACAGCGTTACTACAATTCTAATATCATCACAGAATTTCACAGTACTTGAAATAAACACCACAACTTACACCATGAAACTCAAAAGAACAGACCTTTTTCTCAACCTCTGTTCTCCTCAATTTAATGATACTTTTTTGTCTCTACCTCTGTTTCAAATTCAACATCTCCCACAATTCAAAAACCTCAACATATACTACAACTGTACTTCTCCTCCAATTCCATCTAAAGATTCTCTATGTGGATCTCAGAATCTCGCTTTTGCTCAACTTGCCGATGATGACTCTAATCTTTTTGAAGAATCCACGAATTGTACGAGACGTATTCAAGTCCCAGTAGGAGCAGGTTTTCATATAGATGATTCTTATGGATATAGTTATTTTTTTAAGCGTGATGTTCTTGAAAAAGGTTTGGATGAAGGGTTTCCGGTGAGTTACAGTGTGAGTGGGGAATGTTTAGAGTGCTTGGGAAATCAAGGAGGAGATTGCAGCTGGAAGGATGATAATGAAATTGAGAAACACGTTACCTCCTCTTGCTATTATGGGAATTGCCCAGATGGATCTATGAATTATTCCTCACAATGTTCTTCTATTCACAAAAGCTCATGGAATTTGAAGAGGAAACTCGTTGTTGGTGTTGTTGGAAGTGCAGTAATGGTGGCATTGCTGACGTGCATCATAATTTGTTATATTAAAGGTAAGTCATCAACACAACAACTGAAATTCGGGTTTAAGAGAAAGAATGATAAAAACATCGAAGCATTCTTTAAAGAACATGGAGCTTTGACGCAAAAGGAATATACTTTTGCACAAATAAAGAAAATGACAAATTCATTCAAAATTAAACTTGGTCAAGGGGGTTTTGGTGTTGTGTATAAAGGAAATTTATTCAATGGTTGTCCTGTGGCGGTGAAGATATTGAATGCGTCAAAAAGAAATGGTGAAGAGTTTATTAATGAGGGAATAGCTCGTGGGCTAGAGTACTTGCATAGAGGATGCACCACTCGAATTTTACATTTTGACATAAAACCACATAACATTCTTTTGGATGAGAATTTTAATCCCAAGATTTCTGATTTTGGACTTGCAAAGCTATGCCCTAGAAAAGAGAGCATTATTTCGATGTCGGATCAAAGAGGTACAATGGGATATGTAGCTCCAGAAGTGTGGAATAGACATTTCGGAGGAGTTTCTCATAAGTCAGATGTTTACGGTTATGGAATGATGTTGTTAGAAATGGTGGGTGGAAGGAAAAATATTAATGCTGATGCAAGTAACACAAGTGAGATATACTTTCCTCATTGGGTATATAGTAGGCTTGAGTTTGGAAGTGATTTGAGACCTGATGGAGTAATGGATACAGAAGAAGATGAGATTGCAAGGAGAATGACCATTGTGGGTTTGTGGTGTATTCAAACATTTCCTAATGATAGGCCTGCAATGAGTAAAGTGGTTGAAATGTTAGAAGTTAGCATAAATTCATTGAATATACCACCAAAACCATTACTTTCATCTCCTACTAGATCAGTATCAGAGCCTTAA 1782 0.3698 MDKNIPMNITIQYTSFFFYLLFIISTFSPQVSYSQSVYDYSICKEQSYNCGNLSSISYPFWGHDRPFQCGAGAPFYLDCNENSVTTILISSQNFTVLEINTTTYTMKLKRTDLFLNLCSPQFNDTFLSLPLFQIQHLPQFKNLNIYYNCTSPPIPSKDSLCGSQNLAFAQLADDDSNLFEESTNCTRRIQVPVGAGFHIDDSYGYSYFFKRDVLEKGLDEGFPVSYSVSGECLECLGNQGGDCSWKDDNEIEKHVTSSCYYGNCPDGSMNYSSQCSSIHKSSWNLKRKLVVGVVGSAVMVALLTCIIICYIKGKSSTQQLKFGFKRKNDKNIEAFFKEHGALTQKEYTFAQIKKMTNSFKIKLGQGGFGVVYKGNLFNGCPVAVKILNASKRNGEEFINEGIARGLEYLHRGCTTRILHFDIKPHNILLDENFNPKISDFGLAKLCPRKESIISMSDQRGTMGYVAPEVWNRHFGGVSHKSDVYGYGMMLLEMVGGRKNINADASNTSEIYFPHWVYSRLEFGSDLRPDGVMDTEEDEIARRMTIVGLWCIQTFPNDRPAMSKVVEMLEVSINSLNIPPKPLLSSPTRSVSEP 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07096 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Vifa1g07096 593 ProSiteProfiles Protein kinase domain profile. 283 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07096 593 SMART serkin_6 357 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07096 593 PANTHER RUST RESISTANCE KINASE LR10-RELATED 328 400 IPR045874 GO:0004672
Vifa1g07096 593 Gene3D Transferase(Phosphotransferase) domain 1 401 580 - -
Vifa1g07096 593 Pfam Wall-associated receptor kinase C-terminal 166 249 IPR032872 -
Vifa1g07096 593 Pfam Wall-associated receptor kinase galacturonan-binding 43 109 IPR025287 GO:0030247
Vifa1g07096 593 Pfam Protein kinase domain 398 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07096 593 Gene3D Phosphorylase Kinase; domain 1 337 400 - -
Vifa1g07096 593 SUPERFAMILY Protein kinase-like (PK-like) 346 586 IPR011009 -
Vifa1g07096 593 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Vifa1g07096 593 FunFam PR5-like receptor kinase 387 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07096 Vifa-Chr1 1096158463 1096170303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07096 47 581 Receptor kinase-like Gene Family AT5G38260 33.819 7.66e-96 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa1g07096 Pkinase 7.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07096 - - gmx:100792936 501.516