LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g07094	ATGCGTTGGTTGCCAACCCTAATTTTCTCTCCTTCTTCCTCTTCGTCGTCATCGTCGTCGTCATCGTCTTCCATTACATATCCTTCCACGTTAAAACATTCTCCTTCTTCTTCCTCTTCCGATGTTTCCGTTTCCGATACTCGGAAACCCTCTCGCGGCACGTGGTTTTTCGGTAACGGTAGAAAATCCACGCGGTCCAGGAAGCTCCGGCACGTTGATGATGTTCACATTGAATACGACGTATCAGCGCCTATTTCTCGTTCGAGCTCGCGGAGCTATATTCGGTCTAATACTTCTTCATCCGTTGCGCCTCAGCCATTGCCATTGCCGGAATTAGCTTCTCCGGCTGGGTTGCAAAGGAATAAAGATGGTGATCGGCGTTTGCCGTCGCCTAAAGAAGCCTCTGGTAGAGCCATTGAATCTGATGCGCATGCCGTCGTTTCTCTTCCCACTGGATTTAAGATGCGGAGTGTTTTTGCTAGCCGAGAGACGAGAGGAAATACGGAGCATATGGAGACGAAGCCACCTGGGAATATGATGGCGCGTCAAGATACAAGTGGTGCTGCGACTCCAAGTTTTCGAGAAAATAGCTTCCGGATAAGTGTTCCTCCAAGGAGTGCTTCAAGCAGTCCCTTTACCAGTCCCACAACAAACAACACCAAACATGATGATTTTGTGCCGTATTATTATGTGTCACCTAAAGCAAATCAGTTCTGGTCTGCACCAGAAATGCCAACATCTACAGGACAACCACCTCCTGCTTTCTTTGATTTGTCTGCATTAGGTATTGATTATGCCTCTTCTCCCCATCAAAGTTCTGGAGGAAAAAGTCCCAAACAACAAAACCCTTCTTCACCCCTACCAAGGTTATCCCTCGACTACCCAACAACTTCACGTCGTGAGAGTCTTGGTCCTCCTCTCAGTGTTCATCCTTTACCCTTGCCTCCTTGGTCTGGGAGTTCCTTACCCTCACCCTCTGCTAACTATTCCCAACCTGGGGGAGCTAAGACAGAATCTATATCTATGAAAAGTCAATGGCAAAAGGGTAAACTTATCGGGCGAGGTACTTTTGGAAGTGTTTATGTTGCCACTAATAGAGAAACTGGAGCATTGTGTGCAATGAAGGAAGCAGAAATATTTTCTGATGATCCAAAATCTGCAGAGAGTACAAAGCAGTTAGAACAGGAAATTAAAGTTCTTAGCCATCTGAAACATCCAAACATTGTGCAGTATTACGGTAGTGAAATAGTAGAAGACAAGTTTTATATTTATTTGGAGTTTATCCATCCTGGTTCAATAAATAAATATGTTCGTGACCACTGTGGTGCGATAACAGAATCTGTTGTTCGGAATTTCACACGACATATTCTTTCGGGGCTGGCTTACTTGCACAGCAAAAAGACAATTCATAGGGATATCAAAGGGGCTAACTTGCTTGTTGATTCTTCTGGTGTTGTTAAGCTTGCTGATTTTGGGATGTCCAAGCATCTAACTGGGCATTCTGCTGACCTGTCTTTGAAAGGAAGTCCATACTGGATGGCTCCAGAGCTTATGCAAGCGGTCATGCATAAAGACAACAACTCTGATCTAGCTTTTGCAATTGATATTTGGAGTTTGGGTTGTACAATTATTGAAATGTTCACGGGGAAGCCTCCTTGGAGTGAATACGAAGGAGCTGCAGCTATGTTTAAGGTAATGAAGGATACCCCTCCTATACCTGAAACATTGTCATCAGAAGATCCTTCATCTTCCGCCCATATGTATAATGGAACAACCACAATGGATAATTCCCATAGTCCCAGAGGGTTATATGAAAGCAAACCTGATCAGTTTTCTATTGTCAGTGCACAGATCGCAAAAGGGAAATTTTGCACTGAGAGTGGCATAGCAATGTCCCATTCTCTCTACTCTTGA	1914	0.4441	MRWLPTLIFSPSSSSSSSSSSSSSITYPSTLKHSPSSSSSDVSVSDTRKPSRGTWFFGNGRKSTRSRKLRHVDDVHIEYDVSAPISRSSSRSYIRSNTSSSVAPQPLPLPELASPAGLQRNKDGDRRLPSPKEASGRAIESDAHAVVSLPTGFKMRSVFASRETRGNTEHMETKPPGNMMARQDTSGAATPSFRENSFRISVPPRSASSSPFTSPTTNNTKHDDFVPYYYVSPKANQFWSAPEMPTSTGQPPPAFFDLSALGIDYASSPHQSSGGKSPKQQNPSSPLPRLSLDYPTTSRRESLGPPLSVHPLPLPPWSGSSLPSPSANYSQPGGAKTESISMKSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEAEIFSDDPKSAESTKQLEQEIKVLSHLKHPNIVQYYGSEIVEDKFYIYLEFIHPGSINKYVRDHCGAITESVVRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSSGVVKLADFGMSKHLTGHSADLSLKGSPYWMAPELMQAVMHKDNNSDLAFAIDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMKDTPPIPETLSSEDPSSSAHMYNGTTTMDNSHSPRGLYESKPDQFSIVSAQIAKGKFCTESGIAMSHSLYS	637

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g07094	637	MobiDBLite	consensus disorder prediction	120	139	-	-
	Vifa1g07094	637	Pfam	Protein kinase domain	347	577	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g07094	637	MobiDBLite	consensus disorder prediction	163	191	-	-
	Vifa1g07094	637	MobiDBLite	consensus disorder prediction	200	219	-	-
	Vifa1g07094	637	SUPERFAMILY	Protein kinase-like (PK-like)	341	579	IPR011009	-
	Vifa1g07094	637	MobiDBLite	consensus disorder prediction	266	341	-	-
	Vifa1g07094	637	MobiDBLite	consensus disorder prediction	321	341	-	-
	Vifa1g07094	637	ProSiteProfiles	Protein kinase domain profile.	346	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g07094	637	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	15	579	-	-
	Vifa1g07094	637	Gene3D	Transferase(Phosphotransferase) domain 1	342	600	-	-
	Vifa1g07094	637	MobiDBLite	consensus disorder prediction	86	105	-	-
	Vifa1g07094	637	MobiDBLite	consensus disorder prediction	574	602	-	-
	Vifa1g07094	637	SMART	serkin_6	346	636	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g07094	637	MobiDBLite	consensus disorder prediction	86	143	-	-
	Vifa1g07094	637	MobiDBLite	consensus disorder prediction	1	67	-	-
	Vifa1g07094	637	MobiDBLite	consensus disorder prediction	7	61	-	-
	Vifa1g07094	637	ProSitePatterns	Protein kinases ATP-binding region signature.	352	375	IPR017441	GO:0005524
	Vifa1g07094	637	MobiDBLite	consensus disorder prediction	266	303	-	-
	Vifa1g07094	637	MobiDBLite	consensus disorder prediction	575	600	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g07094	Vifa-Chr1	1095583787	1095588236	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g07094	52	579	MAP Kinase Kinase Kinase	AT5G66850	52.696	4.33e-180	525

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Vifa1g07094		Pkinase	6.5e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g07094	-		-	psat:127120353	1107.82