Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07091 ATGACTCCATCTTTTCTTCAACCTCATTGTTCCTTCCTCGTCAACATCGTTCTCTTCCTCACACTCTTTTTAATCCCAACACAAGTCAATAGTGATGCTAAAAGCTACAAATCATGTGCACCTTTTACCTGTGGAAACTTCACCAACATTACATATCCATTTTGGAATATCAACGATCAACCAAGTTATTGCGGCCATCCAAACTTCACGCTCGATTGTCAGAAAAACAACTTGACTATTGACATCAACTCACAAAAGTTTCATATCATTGATATGAATCAAACATCACAACTCTTAAAGATTGCAAGGTTGGATTTATGGAGTTATGATGCTGCTAATGTCACTTCTTGTCCTGATACTAATGTGAACTTGAATTTGGATTTCTTCAAGTACACTTCCAATGACGAGAATTATAATTTATTGTCCGATTGCGACCCTCTTCCTACTAATTCATATGGATCTCCTTTGAGTTCAGAAGTTTCTCAAGAGATTTCTTGCCTCATAGATAGTAAACCTCAAGATGCATATTTAGTATTAAATACTAAAATGGCGGATTTCACGATCCTAGAGTGTAAGAACAATATCCAAGTTTATGGCCCAAATAGCTCTATTATAGAAAATTCTGATACAGGAGTGGTGAATGTTTTAAGGGAAGGGTTTGAGGTTGGGTGGAGTGTTGTGGAGGAAGATATATGCAATTATTGCAAGAAATATGGTGGGAGATGTGGATACAATACAACCAAAAATGCATTTATGTGTATTTGTCCTAATCAACTGTCTTTTGGTGATTGCGGATTTTGTCGCCAGAATTCAACAACTGCTATTTGGCCGGATGAGTCGGGTTGCGTAGGATCCAAGTTGTTTAAATCTGTGGCACCATCACCTCTACGAGAACCATCTTATGGAGGAACACCAGTGCAAGCATTAGGACCAGCTTTTGGTTCAGATTCGAAAAACTCTCGTGGCACTTCGAGTAAATTGAATGTGAAGAATAAAATCGTCATTGCGGTTGGTTCTGCCGTGATAGGAGCATTTGCAGTGATCATAGCCATATATTTCTATAAGCGCCGGAAGAATACGAATAAAAGTTATGCAAAATCATATGCACAGTCTCGCAGCCTCTCTTCTGAACTCACTTCAAAGGATCTCGAGAGTGGAAGTCAATACTTTGGAAGAAGCCAAAACTTTGGAGTGCAACATTTTACTTATAAAGAACTTGAAGAAGCCACAAACTACTTCGATCCATCTAAAGAACTAGGAGAAGGAGGCTTTGGGACGGTTTATTACGGAAAACTGTATGATGGGCGTAGTGTTGCGGTGAAGAGGTTATTTGAGAACAATTATAAAAGAGTTGAGCAATTCAAGAATGAAGTTGAAATCTTGGCATCATTAGTCCATCCGAATCTTGTGTCTCTGTATGGATGCACTTCACGTCACAGTCGCGAGCTTCTACTTGTCTACGAGTATGTTTCTAATGGAACGGTGGCTGATCATCTCCGTGGTAAAGAAGCAAAACATGGAAAACTTACATGGCCTATTAGAATGAATATTGCCGTGGAGACAGCGAGTGCGTTGAAGTATCTTCATATTTCTGAAATCATTCACCGAGATATAAAGACAAATAATATTCTTCTCGACGCTCATTTTCATGTCAAGGTAGCCGATTTTGGACTCTCGCGCCTTTTTCCATATGATCAAACCCATGTTTCAACGGCTCCACAAGGGACTCCGGGTTACGTGGATCCTGAGTACCATCAGTGCTACCAACTTACCGATAAAAGTGATGTCTATAGCTTTGGAGTTGTGATGATTGAGTTGATATCGTCTTTGCCTGCGGTTGATATAACAAGACATAGGCATGAAATCAATTTGGCTAGCATGGCTCTCAACAGAATTCAAAACCAAGCATTGCATGAAATTGTGGATCCTACGCTCGGTTTTGAATCCGATTCTAAAGTAAAGAAAATGATCGTTGCCATGGGCGAGTTAGCATTTCAATGTCTGCAAAGTTCGAAAGATATGAGACCTAGCATGGACGAAGTGTTGGAAAGCTTAAAGGATATTCAAAATGGTGGTAAGCATAAAAGCCAACCCGAGGTAATGGACATTTCGAGTTTATCTGATGATGCTGTGCTGCTGAATAATGTTCCACCTCCACTATCACCTGATTCGAATGTTAGGAGCAATTATACAACGCCGAATACTAGTGGATAA 2214 0.397 MTPSFLQPHCSFLVNIVLFLTLFLIPTQVNSDAKSYKSCAPFTCGNFTNITYPFWNINDQPSYCGHPNFTLDCQKNNLTIDINSQKFHIIDMNQTSQLLKIARLDLWSYDAANVTSCPDTNVNLNLDFFKYTSNDENYNLLSDCDPLPTNSYGSPLSSEVSQEISCLIDSKPQDAYLVLNTKMADFTILECKNNIQVYGPNSSIIENSDTGVVNVLREGFEVGWSVVEEDICNYCKKYGGRCGYNTTKNAFMCICPNQLSFGDCGFCRQNSTTAIWPDESGCVGSKLFKSVAPSPLREPSYGGTPVQALGPAFGSDSKNSRGTSSKLNVKNKIVIAVGSAVIGAFAVIIAIYFYKRRKNTNKSYAKSYAQSRSLSSELTSKDLESGSQYFGRSQNFGVQHFTYKELEEATNYFDPSKELGEGGFGTVYYGKLYDGRSVAVKRLFENNYKRVEQFKNEVEILASLVHPNLVSLYGCTSRHSRELLLVYEYVSNGTVADHLRGKEAKHGKLTWPIRMNIAVETASALKYLHISEIIHRDIKTNNILLDAHFHVKVADFGLSRLFPYDQTHVSTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVMIELISSLPAVDITRHRHEINLASMALNRIQNQALHEIVDPTLGFESDSKVKKMIVAMGELAFQCLQSSKDMRPSMDEVLESLKDIQNGGKHKSQPEVMDISSLSDDAVLLNNVPPPLSPDSNVRSNYTTPNTSG 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07091 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Vifa1g07091 737 SUPERFAMILY Protein kinase-like (PK-like) 393 685 IPR011009 -
Vifa1g07091 737 MobiDBLite consensus disorder prediction 718 737 - -
Vifa1g07091 737 Gene3D Transferase(Phosphotransferase) domain 1 490 701 - -
Vifa1g07091 737 ProSiteProfiles Protein kinase domain profile. 413 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07091 737 FunFam Wall-associated receptor kinase-like 20 490 698 - -
Vifa1g07091 737 Gene3D Phosphorylase Kinase; domain 1 387 489 - -
Vifa1g07091 737 Pfam Protein kinase domain 416 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07091 737 Pfam Wall-associated receptor kinase galacturonan-binding 39 102 IPR025287 GO:0030247
Vifa1g07091 737 SMART serkin_6 413 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07091 737 Pfam Wall-associated receptor kinase C-terminal 187 257 IPR032872 -
Vifa1g07091 737 ProSitePatterns Protein kinases ATP-binding region signature. 419 441 IPR017441 GO:0005524
Vifa1g07091 737 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 734 IPR044652 GO:0004672
Vifa1g07091 737 CDD STKc_IRAK 419 688 - -
Vifa1g07091 737 MobiDBLite consensus disorder prediction 712 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07091 Vifa-Chr1 1095548550 1095558241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07091 332 737 Receptor kinase-like Gene Family AT1G25390 54.245 1.42e-142 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa1g07091 Pkinase 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07091 - - mtr:25496819 1054.66