Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07090 ATGAACTATATTGATATTTTGAAGATGGGGTTTGTTATAAATTGGACTGCACCTGATTGTCAACACTGTGAGAAAATGGTGGAAGATGTGGATTTGATAATTATAAGTTCATATATATGTTTCTGCAAGGATAAGTCCTACCTCAAAATTTGTGGTGGAGAAGATGGTAAATTGAATGTGAAGAATAAAATCGTCATTGCGGTTGGTTCTGCCGTGATAGGAGCATTTGCAGTGATCATAGCCATATATTTCTATAAGCGCCGGAAGAATACGAATAAAAGTTATGCAAAATCATATGCACAGTCTCGCAGCCTCTCTTCTGAACTCACTTCAAAGGATCTCGAGAGTGGAAGTCAATACTTTGGAAGAAGCCAAAACTTTGGAGTGCAACATTTTACTTATAAAGAACTTGAAGAAGCCACAAACTACTTCGATCCATCTAAAGAACTAGGAGAAGGAGGCTTTGGGACGGTTTATTACGGAAAACTGTATGATGGGCGTAGTGTTGCGGTGAAGAGGTTATTTGAGAACAATTATAAAAGAGTTGAGCAATTCAAGAATGAAGTTGAAATCTTGGCATCATTAGTCCATCCGAATCTTGTGTCTCTGTATGGATGCACTTCACGTCACAGTCGCGAGCTTCTACTTGTCTACGAGTATGTTTCTAATGGAACGGTGGCTGATCATCTCCGTGGTAAAGAAGCAAAACATGGAAAACTTACATGGCCTATTAGAATGAATATTGCCGTGGAGACAGCGAGTGCGTTGAAGTATCTTCATATTTCTGAAATCATTCACCGAGATATAAAGACAAATAATATTCTTCTCGACGCTCATTTTCATGTCAAGGTAGCCGATTTTGGACTCTCGCGCCTTTTTCCATATGATCAAACCCATGTTTCAACGGCTCCACAAGGGACTCCGGGTTACGTGGATCCTGAGTACCATCAGTGCTACCAACTTACCGATAAAAGTGATGTCTATAGCTTTGGAGTTGTGATGATTGAGTTGATATCGTCTTTGCCTGCGGTTGATATAACAAGACATAGGCATGAAATCAATTTGGCTAGCATGGCTCTCAACAGAATTCAAAACCAAGCATTGCATGAAATTGTGGATCCTACGCTCGGTTTTGAATCCGATTCTAAAGTAAAGAAAATGATCGTTGCCATGGGCGAGTTAGCATTTCAATGTCTGCAAAGTTCGAAAGATATGAGACCTAGCATGGACGAAGTGTTGGAAAGCTTAAAGGATATTCAAAATGGTGGTAAGCATAAAAGCCAACCCGAGGTAATGGACATTTCGAGTTTATCTGATGATGCTGTGCTGCTGAATAATGTTCCACCTCCACTATCACCTGATTCGAATGTTAGGAGCAATTATACAACGCCGAATACTAGTGGATAA 1407 0.3994 MNYIDILKMGFVINWTAPDCQHCEKMVEDVDLIIISSYICFCKDKSYLKICGGEDGKLNVKNKIVIAVGSAVIGAFAVIIAIYFYKRRKNTNKSYAKSYAQSRSLSSELTSKDLESGSQYFGRSQNFGVQHFTYKELEEATNYFDPSKELGEGGFGTVYYGKLYDGRSVAVKRLFENNYKRVEQFKNEVEILASLVHPNLVSLYGCTSRHSRELLLVYEYVSNGTVADHLRGKEAKHGKLTWPIRMNIAVETASALKYLHISEIIHRDIKTNNILLDAHFHVKVADFGLSRLFPYDQTHVSTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVMIELISSLPAVDITRHRHEINLASMALNRIQNQALHEIVDPTLGFESDSKVKKMIVAMGELAFQCLQSSKDMRPSMDEVLESLKDIQNGGKHKSQPEVMDISSLSDDAVLLNNVPPPLSPDSNVRSNYTTPNTSG 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07090 468 MobiDBLite consensus disorder prediction 449 468 - -
Vifa1g07090 468 SMART serkin_6 144 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07090 468 ProSiteProfiles Protein kinase domain profile. 144 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07090 468 CDD STKc_IRAK 150 419 - -
Vifa1g07090 468 Gene3D Phosphorylase Kinase; domain 1 118 220 - -
Vifa1g07090 468 MobiDBLite consensus disorder prediction 443 468 - -
Vifa1g07090 468 ProSitePatterns Protein kinases ATP-binding region signature. 150 172 IPR017441 GO:0005524
Vifa1g07090 468 Gene3D Transferase(Phosphotransferase) domain 1 221 432 - -
Vifa1g07090 468 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 2 465 IPR044652 GO:0004672
Vifa1g07090 468 FunFam Wall-associated receptor kinase-like 20 221 429 - -
Vifa1g07090 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Vifa1g07090 468 SUPERFAMILY Protein kinase-like (PK-like) 124 416 IPR011009 -
Vifa1g07090 468 Pfam Protein kinase domain 147 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07090 Vifa-Chr1 1095548550 1095550362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07090 63 468 Receptor kinase-like Gene Family AT1G25390 54.651 1.61e-146 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa1g07090 Pkinase 9.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07090 - - mtr:25496819 665.611