Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07084 ATGTCGTCATCACAAACTTCGCCGTGTGCGGCGTGCAAGTTTCTCCGGCGAAAATGCACGACAGAGTGCGTGTTTGCACCGTATTTTCCACCGGATAACCCTCAAAGGTTTGCATACGTACATAAAGTTTTCGGTGCCAGCAACGTGGCGAAGCTGCTTAACGAGCTTACCCAGAGTCAGCGTGAGGACGCCGTTAAGTCACTGGCTTACGAAGCCGAGGCGCGGCTTCGAGACCCGGTTTACGGCTGCGTTGGTCTTATCTCTCTTCTTCAACATAAGTTAAGAGCGATCCAAGGTGAACTTAATAATGCTAAAAAGGAACTTGCAACTTATATTGGTCCTCAAGCTCTTCAGGGAATTCCTACTAGTATTCTTCAACCGCAACATATTCAAAGCAACCCGTTTTCGAACTCTCTTTACCCTTATAATGGTAATGTTCCGGCGGTGACGGCGACGGCGGTGAATCAGATGGTGATTCGTGACCCACAACCTATGTCGCCTCAGCATCAGATCTTGGAAGCTCAACAATTGGCTGCTGCCGTTGCTGCTAGAGAGCAACAAGAGATTTATAGGACTTTTGAAAATCAACAACAGCAACAGCAAGAGTTTTTGAGGTTCAGTGGTGGGTTTGATGTGGATTCGGTTTCTAATTCTCCTGGTGGGTTCAACCAAGTGTCCCCAGTTTCTGCTGCTGTTGGTGTTGTTGCTGATCAATTGTCTCCTTCTTTGGCCTTGGGATCTTTCGACAATACTTATCACCACATGCAACAAGCACAACAAGGACAAGGAGAGTCTCATCCTCATCATCATAATCATAATCATAATCATCATCTTCCACTTCAAGCACAGCTATTGCTCCCTCCTCAACAGAAGCAAGCACAGCCACAAACTCAACATTCACCGTTAGCACATCACCAACAACAGACGGAAAGCGAGGAGTGTAGGAGTGTTGGACTTGGTCCTTCTTGTTGA 972 0.4691 MSSSQTSPCAACKFLRRKCTTECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELTQSQREDAVKSLAYEAEARLRDPVYGCVGLISLLQHKLRAIQGELNNAKKELATYIGPQALQGIPTSILQPQHIQSNPFSNSLYPYNGNVPAVTATAVNQMVIRDPQPMSPQHQILEAQQLAAAVAAREQQEIYRTFENQQQQQQEFLRFSGGFDVDSVSNSPGGFNQVSPVSAAVGVVADQLSPSLALGSFDNTYHHMQQAQQGQGESHPHHHNHNHNHHLPLQAQLLLPPQQKQAQPQTQHSPLAHHQQQTESEECRSVGLGPSC 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07084 323 Coils Coil 87 107 - -
Vifa1g07084 323 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 289 - -
Vifa1g07084 323 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Vifa1g07084 323 MobiDBLite consensus disorder prediction 288 323 - -
Vifa1g07084 323 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Vifa1g07084 323 MobiDBLite consensus disorder prediction 288 305 - -
Vifa1g07084 323 MobiDBLite consensus disorder prediction 255 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07084 Vifa-Chr1 1094627162 1094628133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07084 3 253 AS2 family AT5G66870 51.481 5.67e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g07084 LOB 4.1e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07084 1 1094627162 1094628133 Vifa1g07084 1 1094627162 1094628133 ECH
Vifa4g02561 4 775204573 775205196 Vifa1g07084 1 1094627162 1094628133 PCT