Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07079 ATGTTACTTCTGATGAACATGATGATCGAATTACCCAATGGACCAATTAAAACCCCTCAATATCACCCACAATTCAGAACTATTTCACTTCTTCTCTCTCGTTCGCACAGCACAACACCCACGCCAGTTCGCCGCTATCGATTTGCACTGCTTCCACCAGCGACGCCGTCATGGTTTCTCGTTGCCACCTCCACCCACTACGGTGTTTGCTTCATCTTCTTCATCCAACTATTTAATTCCTCTCCTCTTGAAGGCTTTTTAGATAAAGAAAGGTCCAAAAGCTTCTCCTTTTTTCTCTTCTCGTCGCTGCCCGACATCACCGGCTTCCACCACAACCATGTCTTCTCTTCATTTCAACCTCCATCCACTCCCTCCATCTTCATCTCCACTACTCACCACCACCAACAACATTTCTTCCTTCTCCCCCACTTCCCTCTCCATCTTCTACAACAACCACCACCACCTTCTTCGCTTCAATCTCATCGGGATTTGAAGCCGCAGAATTTGCTTCTCGATCAACAGCAAGGGATTTTGAAGATTGCTGATCTTGGTCTTGGGAGGGCTTTTACCGTCCCGCTTAAGAGTTATACTCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTTTGCTTGGATCTACTACCTACTCTACTAGAGTTGATATCTGGTCTGTTGGATGTATCTTTGCTGAAATGGTGAGGAGACATGCTTTGTTTCCGGGGGATTCTGAATATCAGCAGCTTCTTAATATATTCAAGGTAATGCGGAGAAGTCCAGAATAA 786 0.4504 MLLLMNMMIELPNGPIKTPQYHPQFRTISLLLSRSHSTTPTPVRRYRFALLPPATPSWFLVATSTHYGVCFIFFIQLFNSSPLEGFLDKERSKSFSFFLFSSLPDITGFHHNHVFSSFQPPSTPSIFISTTHHHQQHFFLLPHFPLHLLQQPPPPSSLQSHRDLKPQNLLLDQQQGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTTYSTRVDIWSVGCIFAEMVRRHALFPGDSEYQQLLNIFKVMRRSPE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07079 261 ProSiteProfiles Protein kinase domain profile. 1 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07079 261 Gene3D Transferase(Phosphotransferase) domain 1 161 258 - -
Vifa1g07079 261 PANTHER CELL DIVISION PROTEIN KINASE 161 253 - -
Vifa1g07079 261 SUPERFAMILY Protein kinase-like (PK-like) 161 255 IPR011009 -
Vifa1g07079 261 Pfam Protein kinase domain 161 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07079 261 SMART serkin_6 89 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07079 Vifa-Chr1 1093474606 1093485417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07079 161 256 Core Cell Cycle Gene Families AT2G38620 85.417 7.06e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa1g07079 Pkinase 6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07079 K07760 - gmx:100805119 179.104