Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07078 ATGGGGGAAGTGAACTTGGATTTGACTTTAGCCTCTGTTCCCAAAACCGTTTCTAATTTCCTCAACGAAGTTTCTCTCACCAAAGACTCATCGAAGAAGCTTTCAATGCTCGATGACTTGGTTCGTAGATTGGAAGAAGAAATGAACAAAGTCCTCGCTTTCAAACGCGAACTTCCTCTCTGTATACTCCTCGTTAACGATGCTATTGCGAGATTGAAGGATGAAAAAGAAAAAGTTAGATTACTCAAAATGCAAGATCCAGTTATGATGAATGACAAGTCTGATAATAAGATGAATTGGATGAGTTCAGTTCAGCTTTGGACTACTCAAACAAAATCGAAGAATGAAGATGGTGATAGGTCTGTGTTACAGAAGAGTAATGGTGGAGGGGTATTTATGGCATTTAATGAAAATACTCGTGTTCCTTTGAAGGAGGTTTCTCAGGTTCCGAGTTTTAGTTTGGTGTCTGAAGTGAGTCATGGAAATTCTAAGACTGGTTGTGATCGAAGTAGTTCTGGTTCGTCTTTGTTGCGAGTTGAGATACAGAATCAACAGCCGCAGCCACCTCAGCCTTTGCTGCAGAGTTCCAGGAAACAAAGGCGGAGCTGGTCTTCCGAGCTTCATCGCCGTTTTGTTGATGCTCTTCAGCAGCTTGGTGGAGCACATGCAGCCACTCCTAAACAAATTAGAGAAAAGATGCAAGTGGATGGATTAACAAATGATGAAGTGAAAAGCCATTTGCAGAAATACAGGCTTCATGTTAGAAGATTCCCAGTTTCTTCAATTGAGGAGGCTAATAAACTAGCCTTATATATGATCCAAGATCAAGATACATCCAAGGGAAATTTATCAGAGTCTGTTTCACCACAGGGTCCTCTTACTCCTATTCTCATTGGAGGATCTGTTAAAGGTCTCTCGAGCCACGGAAGAAACAGTGTGGATGCAGAAGATGAACAATCAGATTGCAGGAATTGGAAAGATGATCAGGAGCAGCAGCAACATGAAGCCGAATAA 1014 0.4162 MGEVNLDLTLASVPKTVSNFLNEVSLTKDSSKKLSMLDDLVRRLEEEMNKVLAFKRELPLCILLVNDAIARLKDEKEKVRLLKMQDPVMMNDKSDNKMNWMSSVQLWTTQTKSKNEDGDRSVLQKSNGGGVFMAFNENTRVPLKEVSQVPSFSLVSEVSHGNSKTGCDRSSSGSSLLRVEIQNQQPQPPQPLLQSSRKQRRSWSSELHRRFVDALQQLGGAHAATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPVSSIEEANKLALYMIQDQDTSKGNLSESVSPQGPLTPILIGGSVKGLSSHGRNSVDAEDEQSDCRNWKDDQEQQQHEAE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07078 337 Coils Coil 65 85 - -
Vifa1g07078 337 Gene3D - 197 254 - -
Vifa1g07078 337 MobiDBLite consensus disorder prediction 310 337 - -
Vifa1g07078 337 Pfam Myb-like DNA-binding domain 200 251 IPR001005 -
Vifa1g07078 337 SUPERFAMILY Homeodomain-like 196 256 IPR009057 -
Vifa1g07078 337 Coils Coil 37 57 - -
Vifa1g07078 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 326 IPR044787 GO:0003700|GO:0006355
Vifa1g07078 337 MobiDBLite consensus disorder prediction 279 337 - -
Vifa1g07078 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 255 IPR017930 -
Vifa1g07078 337 FunFam Myb family transcription factor 197 255 - -
Vifa1g07078 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 253 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07078 Vifa-Chr1 1093187637 1093189519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07078 1 248 G2-like Transcription Factor Family AT4G37180 45.725 5.97e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g07078 Myb_DNA-binding 3.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07078 - - pvu:PHAVU_002G021400g 352.443