Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07076 ATGGCGACTCCGTTAACGGGATTGCAGCAGCACTTAGACGGCGGAGGCGGCGGAGTGGCCGTGCTGTCGAATCTTGTTTCTCCTTCTTCCACCTCCAATGGGGGCGGCGGACTCAACCGTTCCTCTTTATCCGAATCGCCAATTTTGATTTTCTCGTTTTTCCAAAAAGCGATTGGGAACGAGCTCGATGGGTTGCACCGATTAGCTTTGGCGTTCGCCACCGGAAACTGCTCCGATATTCAACCTCTCTCCGAACGCTACCATTTCCTTAGGTCGATGTATAGACACCATTCCAATGCTGAAGATGAGGTGATTTTTCCAGCTTTGGATAAGCGCGTGAAGAATGTAGCACAGACATATTCTCTTGAACATAAGGGTGAAAGCGATCTTTTTGACCATTTGTTTGAGTTGTTAAACTCTTCGGTTGATAATGATGAAAGTTTTCGAAGGGAGCTAGCATCCTGTACAGGAGCTCTGCAGACGTCTCTTAGTCAACACATGGCTAAGGAGCAACAGCAAGTGTTTCCACTGCTTATTGAGAAGTTCTCAGTGGAGGAACAAGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCAGTGAATATGATGGCAGAATTTCTTCCATGGCTTTCAACATCCATATCACCTGATGAATCTCAGGATTTACGGAAGTGCTTAAGCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGAAGGGCGGAGTAGTCCTAACACAGTTGAAAATTGTGTAGATCATTCTCAGGTTCAATGTAGTGCTTGTCCTTTAGCCCATCAGACTGAGAAAATAAAATGTGCATGCGAGTCCACTGTATCTGGGAAAAGAAAATATTCTGCAGCTATTCTAGATGTTCCGGAGACAATGGGTTCGCATCCTATAGATGAAATATTGCTCTGGCATAATGCTATAAAAAATGAGTTAAATGAGATAGCAGTGGAGACCAGAAAGATACAACACTCTGGAGATTATACTAATCTGTCTGCTTTTAATGAAAGGTTGCAATTCATTGCTGAAGTTTTCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCGGCAGTGGATGGAGACTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTCAATGACTTCCGATCTTTGATTGAAAGAATTCTAAGTGAAGAAGCAACATCTAGTTCAGAAGTTGAACTTTATTCCAAGTTGTGCTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCACGGAAGAACTTTAGCTTCAAAAGGCAGCGTGAACTAGTGTATGAAAGCTTGTGCATGATGCCTCTAAAATTGATTGAGCGTGTTCTACCATGGTTTGTTGGATCATTAACTGAAGATGAAGCTGAGATATTTCTGAAAAACATACAATCGGCAGCTCCAGCAATAGATTCTGCTTTAGTCACTCTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAAAAATGGTCAGTGCTTGTCTTCAAGTGCATCACGCTTCTGTCCTGCTAAAAAAATTGTCCGGTCTTCCTGTGCTTGTGCATTGTCTGGTAAAGATTGCTCAGTATTAGCTGAATCAGATGGGACCCAAAGATCAGTGAAGAGAAGCATACTGGAGTTGCACAAAAATGGAGATGTATCAAAAACACCAGAAAATGAATGTGCCCAGAAACCATGTTGTGGTGCCCGGTCTTGTTGTGTACCAGCGTTAGGGGTCAGCAGTAACAATTTGGGGCTGAGTTCACTTTCTGCTGCCAAGTCCTTACGGAGCTTCACTTCTTCTGCCCCATCTCTCAATTCCAGTCTTTTCATATGGGAAACTGATAGCAGCTCATGTGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCACAAGGCTATACGCATAGATTTGGAGTATTTAGATATAGAATCTGGAAAGCTTTGTGATGGTGATGGAGCAACTATTCGGCAATTTACTGGAAGATTCCGTCTTTTATGGGGTTTATACAGAGCTCATAGTAATGCTGAAGACGATATAGTTTTTCCTGCATTGGAATCCAAAGAGACACTTCATAATGTGAGCCATTCTTACACACTGGATCATAAAGCAGAAGAGAAGTTATTTGAAGATATTTCTTGTGCTCTCTCTGAGCTTTCTGTCCTTCATGAAGCATTGCAGAGGACCCATATGTCAGAGGATTTAAGAGATAGTAATTTGGGATTGTCTGAAGTCAATAATACTGATGATATCAGAAAGTTCAATGAGCTTGCAACTAAGCTTCAAGGGATGTGTAAATCTATACGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGCTTGAACTCTGGCCGTTGTTTGGGAAGCATTTCACCGTGGAAGAACAAGACAAGATAGTGGGCCGAATAATTGGAACTACCGGAGCCGAAGTTCTCCAATCAATGTTACCGTGGGTGACTTCTGCACTTACACAAGATGAACAGAACCAAATGATGGATACATGGAAACAAGCAACTAAGAATACAATGTTCAATGAATGGCTAACTGAATGCTTGATAGAGAGTCCAGGCTCTACATCACAGACAGAAACATCAGAACATAGCACTTCTCAAAGAGGTGCTGAATATCAAGAAAGCTTGAACCTGAATGATCAGATGTTTAAGCCTGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAAATCCGGAAAGTTTATCGTGACTCAACCCTTGACCCAAGGAGAAAGGCATATCTAGTGCAGAATCTGATGACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCTAAATCTCAATCTGGGGAATCATCTAATAAACAAATAGAAGGGCGTGTACCTTCATTTCGGGACCCAGAGAAACAAGTATTTGGTTGTGAGCACTATAAGAGAAATTGCAAAGTTCGAGCTGCTTGTTGTGGGAAGTTATTTACATGCAGATTTTGTCATGACAACAATTCAAGTGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGGCCTGCATGACTATACAGCCAGTTGGGCCCATGTGCACAACACCTTCTTGTAATGGACTTTCAATGGCAAAATACTACTGTAACATTTGCAAATTTTTTGATGATGAAAGGAATGTTTACCATTGCCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGGATTGATTACTTTCATTGTATGAAATGTAATTGTTGTGTGGGGATAAAATCAGTGTCTCACAAGTGCCTGGAGAAAGGGTTAGAAATGAACTGCCCAATTTGCTGTGACGACTTGTTCACATCAAGTGCAACAGTCAGAGCTCTTGCTTGTGGGCATTACATGCATTCATCTTGCTTTCAGGCATACACTTGCAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCTTTGTTGGCAGCTGAGCAGCTTCCTGAAGAGTACAGGGACCGCTCTCAGGACATACTCTGCCATGACTGTGATCGAAAGGGAATCTCACACTTCCACTGGTTATATCATAAATGTGGATTTTGTGGTTCATATAATACTCGGGTGATCAAGAGTGAGACAACAAATTCCAGCTGCCCTTAA 3705 0.4194 MATPLTGLQQHLDGGGGGVAVLSNLVSPSSTSNGGGGLNRSSLSESPILIFSFFQKAIGNELDGLHRLALAFATGNCSDIQPLSERYHFLRSMYRHHSNAEDEVIFPALDKRVKNVAQTYSLEHKGESDLFDHLFELLNSSVDNDESFRRELASCTGALQTSLSQHMAKEQQQVFPLLIEKFSVEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRKCLSKIVPEEKLLQKVIFTWMEGRSSPNTVENCVDHSQVQCSACPLAHQTEKIKCACESTVSGKRKYSAAILDVPETMGSHPIDEILLWHNAIKNELNEIAVETRKIQHSGDYTNLSAFNERLQFIAEVFIFHSIAEDKVIFPAVDGDFSFFQEHAEEESQFNDFRSLIERILSEEATSSSEVELYSKLCSHADHIMETIQRHFHNEEVQVLPLARKNFSFKRQRELVYESLCMMPLKLIERVLPWFVGSLTEDEAEIFLKNIQSAAPAIDSALVTLFSGWACKARKNGQCLSSSASRFCPAKKIVRSSCACALSGKDCSVLAESDGTQRSVKRSILELHKNGDVSKTPENECAQKPCCGARSCCVPALGVSSNNLGLSSLSAAKSLRSFTSSAPSLNSSLFIWETDSSSCDVGSAERPIDTIFKFHKAIRIDLEYLDIESGKLCDGDGATIRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKAEEKLFEDISCALSELSVLHEALQRTHMSEDLRDSNLGLSEVNNTDDIRKFNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNQMMDTWKQATKNTMFNEWLTECLIESPGSTSQTETSEHSTSQRGAEYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKSQSGESSNKQIEGRVPSFRDPEKQVFGCEHYKRNCKVRAACCGKLFTCRFCHDNNSSDHSMDRKATLEMMCMACMTIQPVGPMCTTPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCVGIKSVSHKCLEKGLEMNCPICCDDLFTSSATVRALACGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEQLPEEYRDRSQDILCHDCDRKGISHFHWLYHKCGFCGSYNTRVIKSETTNSSCP 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07076 1234 Gene3D nmb1532 protein domain like 638 876 - -
Vifa1g07076 1234 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 685 1230 - -
Vifa1g07076 1234 Gene3D nmb1532 protein domain like 46 196 - -
Vifa1g07076 1234 Gene3D nmb1532 protein domain like 307 455 - -
Vifa1g07076 1234 ProSiteProfiles Zinc finger RING-type profile. 1118 1160 IPR001841 -
Vifa1g07076 1234 SUPERFAMILY Zinc hairpin stack 1055 1110 IPR037275 -
Vifa1g07076 1234 CDD Hr-like 50 176 - -
Vifa1g07076 1234 Pfam CHY zinc finger 988 1064 IPR008913 GO:0008270
Vifa1g07076 1234 MobiDBLite consensus disorder prediction 875 895 - -
Vifa1g07076 1234 ProSiteProfiles Zinc finger CTCHY-type profile. 1054 1117 IPR017921 -
Vifa1g07076 1234 CDD RING-H2_Pirh2-like 1117 1160 - -
Vifa1g07076 1234 SMART ring_2 1118 1159 IPR001841 -
Vifa1g07076 1234 ProSiteProfiles Zinc finger CHY-type profile. 981 1051 IPR008913 GO:0008270
Vifa1g07076 1234 Pfam Zinc-ribbon 1165 1222 IPR039512 -
Vifa1g07076 1234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1112 1162 IPR013083 -
Vifa1g07076 1234 Gene3D - 1189 1231 - -
Vifa1g07076 1234 Pfam Hemerythrin HHE cation binding domain 61 178 IPR012312 -
Vifa1g07076 1234 Pfam Hemerythrin HHE cation binding domain 304 438 IPR012312 -
Vifa1g07076 1234 Pfam Hemerythrin HHE cation binding domain 642 805 IPR012312 -
Vifa1g07076 1234 CDD Hr-like 307 436 - -
Vifa1g07076 1234 FunFam Zinc finger protein-related isoform 1 1113 1162 - -
Vifa1g07076 1234 Pfam Ring finger domain 1117 1159 IPR001841 -
Vifa1g07076 1234 SUPERFAMILY RING/U-box 1115 1170 - -
Vifa1g07076 1234 SUPERFAMILY CHY zinc finger-like 981 1045 IPR037274 GO:0008270
Vifa1g07076 1234 CDD Hr-like 644 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07076 Vifa-Chr1 1092573270 1092581573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07076 1 1233 C2H2 Transcription Factor Family AT3G18290 66.166 0.0 1667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07076 K16276 - gmx:100791354 2112.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07076 1 1092573270 1092581573 Vifa1g07076 1 1092573270 1092581573 ECH
Vifa1g07076 1 1092573270 1092581573 Vifa1g07076 1 1092573270 1092581573 PCT