Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07072 ATGGATATGCCGCCGCCGATCATGCACGACAGTGACCGTTACGACTTCGTTCGTGATATCGGATCGGGAAATTTCGGCGTGGCTAGACTCATGACTGATAAACTCACCAAAGACCTTGTTGCTGTCAAGTACATCGAACGTGGAGACAAGATTGATGAAAATGTTAAGAGAGAAATAATCAATCACAGGTCTCTAAGACATCCTAATATTGTTAGGTTTAAGGAGGTCATTTTAACACCTACTCATCTGGCCATTGTAATGGAATATGCATCTGGAGGAGAAATGTTCGATCGAATCAGCAAAGCAGGGCGTTTTACTGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCCGGGGTCAGCTATTGTCATTCAATGCAAGTATGTCATCGAGATCTGAAGTTGGAAAACACGTTGTTGGATGGAGACCCAGCACTTCATCTGAAGATTTGTGATTTTGGATACTCCAAATCTTCGGTGCTTCATTCACAGCCAAAGTCAACTGTGGGAACTCCTGCTTATATTGCTCCAGAAGTACTTCTGAAGCAAGAGTATGATGGAAAGATTGCCGATGTCTGGTCATGTGGTGTAACCTTATACGTGATGCTAGTGGGGTCATATCCTTTTGAAGATCCCGATAATCCGAAGGATTTCCGGAAGACAATTCAGAGGGTTCTCAGTGTCCAGTATTCCGTACCAGACTTTGTTCAAATATCTCCTGAATGTCGCGACATTATATCAAGAATCTTTGTTTTTGACCCTGCAGAGAGAATCACCATTCCAGAAATAATGAAGAACGAATGGTTCCGAAAGAATCTTCCTGCTGACTTGGTGAATGAAAATATAATGGATAACCAATTTGAAGAGCCAGATCAGCCTATGCAGAGTATGGATACGATCATGCAGATAATTTCAGAAGCTACCGTACCAGCAGCTGGGAGCTATTATTTTGACGAGTTTATCGAAGTGGATGAAGATATGGATGAAATAGACTCTGACTATGAACTTGATGTAGATAGCAGTGGTGAGATTGTATATGCCATATAA 1050 0.4181 MDMPPPIMHDSDRYDFVRDIGSGNFGVARLMTDKLTKDLVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGEMFDRISKAGRFTEDEARFFFQQLISGVSYCHSMQVCHRDLKLENTLLDGDPALHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLYVMLVGSYPFEDPDNPKDFRKTIQRVLSVQYSVPDFVQISPECRDIISRIFVFDPAERITIPEIMKNEWFRKNLPADLVNENIMDNQFEEPDQPMQSMDTIMQIISEATVPAAGSYYFDEFIEVDEDMDEIDSDYELDVDSSGEIVYAI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07072 349 FunFam Serine/threonine-protein kinase SRK2E 90 278 - -
Vifa1g07072 349 SUPERFAMILY Protein kinase-like (PK-like) 8 308 IPR011009 -
Vifa1g07072 349 FunFam Serine/threonine-protein kinase SRK2E 5 89 - -
Vifa1g07072 349 ProSiteProfiles Protein kinase domain profile. 14 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07072 349 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Vifa1g07072 349 Gene3D Transferase(Phosphotransferase) domain 1 90 277 - -
Vifa1g07072 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vifa1g07072 349 PANTHER SERINE/THREONINE KINASE 13 290 - -
Vifa1g07072 349 SMART serkin_6 14 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07072 349 Pfam Protein kinase domain 14 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07072 349 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07072 Vifa-Chr1 1091516397 1091519942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07072 13 274 CBL-interacting serine-threonine protein kinases AT5G25110 44.928 1.25e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vifa1g07072 Pkinase 1.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07072 K14498 - gmx:100783967 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02557 4 774815549 774818749 Vifa1g07072 1 1091516397 1091519942 PCT