Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07055 ATGTCACAGTCAGCCGGAGTTCACCTCCCCCTTCTGATACGATCAAAATCGGCGGTGGAGCATGGCATTGTACCCGGCACCGTATTCAATATGGTTAACAGCATAATTGGATCTGGAATCATGTCACTTTCGGCGATCCTAAAAGTTATCGGAGTGTTTCCTTCTCTGGCTGTAATTGTGATCGTGGCGGTGCTAGCTGAAATCTCTGTCGACTTTCTCATGCGTTTTAGCGACGCCGGAATAAAGCCGACGTGCGCGAGTGTGATGAAGGAGGCTTTTGGATCCGTTGGAGGATTAATCACTAAAGTTTGTATCATTATCAATAACTTTGGAGGTGCAATTCTGTTACTTATTATAATCGGGGATGTTCTATCTGGAAAGAAAAGTGGAGATGAAGTGCACTTAGGAATTTTGCAACAGTGGTTTGGAATTCATTGGTGGAATTCCAGAGAAGTTGCTCTTCTCATCACTTTGGTTCTGGTTATGCTTCCATTGGTCTTGTACAGACGTGTAGAATCCTTGAAGTACAGTTCTGCAATATCAGCTCTTCTTGCTGTGTCATTTGTTGCCATTCGTTCCGGGTTGGCTATTGTTGCTTTAGTGCAAGGAAAAACACAAACTCCTAAGTTGGTTCCTAGAATAGACAACCAGAAATCTTTCTTTGATTTGTTCACTGCAGTTCCTGTTGTAGTCACAGCATTTGCATTTCATTTCAATGTGCATCCAATTGGATTTGAGCTCGCAAAGCCATCTGATATGAAAATAGCAGTTCGATTAGCATTAATGTTTTGTGTTGTTATCTACTTTACAATTGGTTTATTCGGTTATCTCTTATTTGGAGATTTAACACAATCAGACATTCTAGTCAATTTTGATCAGACTGCTGATTCTGCTGTTGGTTCATTCTTCAATAGTTTAATACGTGTAAGCTATGCACTCCACATTATGCCAGTATTCCCAATCTTGAATTTCTCTTTGAGAGCCAACATTGATGAGCTCTTCTTCCCCAAGAAGCCTCTGCTAGCCACAGACAACAAGAGATTTGTGATTCTCACTCTTGTGATCTTAGTATTCTCCTATCTTGCTGCTATAGCAATACCAGATATTTGGGATGCTCTTAGAATATCAACAAGGAAGGACAAAATAATAGCACTAGTTATGATTATACAAGCTTTAGGGACAAGTGCAATTGCAATTTCCACCAACATATACAATGCTTTTAAGTAG 1227 0.4018 MSQSAGVHLPLLIRSKSAVEHGIVPGTVFNMVNSIIGSGIMSLSAILKVIGVFPSLAVIVIVAVLAEISVDFLMRFSDAGIKPTCASVMKEAFGSVGGLITKVCIIINNFGGAILLLIIIGDVLSGKKSGDEVHLGILQQWFGIHWWNSREVALLITLVLVMLPLVLYRRVESLKYSSAISALLAVSFVAIRSGLAIVALVQGKTQTPKLVPRIDNQKSFFDLFTAVPVVVTAFAFHFNVHPIGFELAKPSDMKIAVRLALMFCVVIYFTIGLFGYLLFGDLTQSDILVNFDQTADSAVGSFFNSLIRVSYALHIMPVFPILNFSLRANIDELFFPKKPLLATDNKRFVILTLVILVFSYLAAIAIPDIWDALRISTRKDKIIALVMIIQALGTSAIAISTNIYNAFK 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07055 408 PANTHER AMINO ACID TRANSPORTER 23 375 - -
Vifa1g07055 408 Pfam Transmembrane amino acid transporter protein 27 369 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07055 Vifa-Chr1 1090331465 1090332766 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07055 1 405 Amino Acid or Auxin Permease AAAP Family AT3G56200 50.348 3.04e-141 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07055 - - gmx:100813056 538.495