Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07046 ATGTCCTTCTTCTCCAGGCTCTGCGCGTGCTTGCAGAGGCGCCTGAAGAAGGGCGGCACAGCCTCCGAACACGGCGGAGACGATGATAAAGATACCATCGACGCCGGTGACTCTTCCAACCTGTTGTTCGACCTTCATACTCTTCAACTCGCCACCAATTTCTTCTCTGAGCTTAATCAACTTGGTCGTGGAGGCTTTGGTCCTGTTTTCAAGGGATTGATGCCAAATGGTGAACAAGTGGCAATTAAAAAGCTTTCATTGGAATCTAGACAAGGGGTTAGAGAATTTACCAACGAAGTTCGGCTATTACTAAGAATTCAGCACAAGAATTTAGTTACTTTACTAGGTTGTTGTGCAGAAGGACCCGAAAAAATGCTTGTCTATGAGTATCTACCAAACAAAAGCCTTGATCACTTTCTGTTTGATGAAAAGAGGTCTTTGGATTGGACGACACGGTTTCAAATAGTTACCGGTATCACAAGAGGACTTCTCTACCTGCATGAAGAGGCCCCTGAAAGAATTATTCACAGAGACATTAAAGCTAGTAATATATTGCTGGATGAGAAATTAAATCCGAAAATCTCAGACTTCGGTTTGGCAAGGCTGTTTCCTGGAGAGGATACTCATGTGCAGACATTTAGGATTTCCGGTACACATGGTTACATGGCTCCTGAATATGCATTACGTGGATATCTTTCTGTAAAGACTGATGTTTTCAGTTATGGAGTCTTGGTGTTGGAAATAGTTAGTGGGAGAAAAAACCATGATGTGAAGCTTGGTTCAGAAAAGGCAGATCTCCTAAGCTATGCATGGAAGCTTTATCAAGGAGGGAAGAGTATGGATTTAATAGACCAGAGCATTGGTAAATACAACGGTGACGAGGCTGCGATGTGCATTCAGCTAGGTTTATTGTGCTGTCAAGCAAGTGTAGTGGAGAGACCTGACATGAATTCAGTTCATCTAATGCTATCAAGTGATTCATTCACTTTGCCAAGACCAAGTAAACCAGGAATTCAGGGCCGTGTAGGAAAGTGGACTACAACCAACAGTTCTGCTTTGACCAATACTAATGCCAGTAGTACAACAAGAGTCTCGGGTGGTAGTAGTTTTGTAGAGGATTATTCTAGAAATTCTATCTCTACTTCTTCTTTTGATGAAGGAAGATAA 1167 0.4242 MSFFSRLCACLQRRLKKGGTASEHGGDDDKDTIDAGDSSNLLFDLHTLQLATNFFSELNQLGRGGFGPVFKGLMPNGEQVAIKKLSLESRQGVREFTNEVRLLLRIQHKNLVTLLGCCAEGPEKMLVYEYLPNKSLDHFLFDEKRSLDWTTRFQIVTGITRGLLYLHEEAPERIIHRDIKASNILLDEKLNPKISDFGLARLFPGEDTHVQTFRISGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIVSGRKNHDVKLGSEKADLLSYAWKLYQGGKSMDLIDQSIGKYNGDEAAMCIQLGLLCCQASVVERPDMNSVHLMLSSDSFTLPRPSKPGIQGRVGKWTTTNSSALTNTNASSTTRVSGGSSFVEDYSRNSISTSSFDEGR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07046 388 Gene3D Phosphorylase Kinase; domain 1 19 130 - -
Vifa1g07046 388 Gene3D Transferase(Phosphotransferase) domain 1 131 329 - -
Vifa1g07046 388 FunFam Cysteine-rich receptor-like protein kinase 2 22 130 - -
Vifa1g07046 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Vifa1g07046 388 SMART serkin_6 55 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07046 388 ProSiteProfiles Protein kinase domain profile. 55 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07046 388 CDD STKc_IRAK 61 323 - -
Vifa1g07046 388 FunFam Cysteine-rich receptor-like protein kinase 41 131 329 - -
Vifa1g07046 388 MobiDBLite consensus disorder prediction 349 388 - -
Vifa1g07046 388 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 380 - -
Vifa1g07046 388 Pfam Protein kinase domain 56 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07046 388 SUPERFAMILY Protein kinase-like (PK-like) 43 336 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07046 Vifa-Chr1 1089012862 1089014672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07046 3 368 Receptor kinase-like Gene Family AT4G23150 47.154 8.35e-110 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g07046 Pkinase 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07046 - - tpra:123884781 695.656