Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07045 ATGTCCTTCTTCTCCAGGCTCTGCGCGTGCTTGCAGAGGCGCCTGAAGAAGGGCGGCACAGCCTCCGAACACGGCGGAGACGATGATAAAGATACCATCGACGCCGGTGACTCTTCCAACCTGTTGTTCGACCTTCATACTCTTCAACTCGCCACCAATTTCTTCTCTGAGCTTAATCAACTTGGTCGTGGAGGCTTTGGTCCTGTTTTCAAGGGATTGATGCCAAATGGTGAACAAGTGGCAATTAAAAAGCTTTCATTGGAATCTAGACAAGGGGTTAGAGAATTTACCAACGAAGTTCGGCTATTACTAAGAATTCAGCACAAGAATTTAGTTACTTTACTAGATGAAAAGAGGTCTTTGGATTGGACGACACGGTTTCAAATAGTTACCGGTATCACAAGAGGACTTCTCTACCTGCATGAAGAGGCCCCTGAAAGAATTATTCACAGAGACATTAAAGCTAGTAATATATTGCTGGATGAGAAATTAAATCCGAAAATCTCAGACTTCGGTTTGGCAAGGCTGTTTCCTGGAGAGGATACTCATGTGCAGACATTTAGGATTTCCGGTACACATGGTTACATGGCTCCTGAATATGCATTACGTGGATATCTTTCTGTAAAGACTGATGTTTTCAGTTATGGAGTCTTGGTGTTGGAAATAGTTAGTGGGAGAAAAAACCATGATGTGAAGCTTGGTTCAGAAAAGGCAGATCTCCTAAGCTATGCATGGAAGCTTTATCAAGGAGGGAAGAGTATGGATTTAATAGACCAGAGCATTGGTAAATACAACGGTGACGAGGCTGCGATGTGCATTCAGCTAGGTTTATTGTGCTGTCAAGCAAGTGTAGTGGAGAGACCTGACATGAATTCAGTTCATCTAATGCTATCAAGTGATTCATTCACTTTGCCAAGACCAAGTAAACCAGGAATTCAGGGCCGTGTAGGAAAGTGGACTACAACCAACAGTTCTGCTTTGACCAATACTAATGCCAGTAGTACAACAAGAGTCTCGGGTGGTAGTAGTTTTGTAGAGGATTATTCTAGAAATTCTATCTCTACTTCTTCTTTTGATGAAGGAAGATAA 1089 0.4261 MSFFSRLCACLQRRLKKGGTASEHGGDDDKDTIDAGDSSNLLFDLHTLQLATNFFSELNQLGRGGFGPVFKGLMPNGEQVAIKKLSLESRQGVREFTNEVRLLLRIQHKNLVTLLDEKRSLDWTTRFQIVTGITRGLLYLHEEAPERIIHRDIKASNILLDEKLNPKISDFGLARLFPGEDTHVQTFRISGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIVSGRKNHDVKLGSEKADLLSYAWKLYQGGKSMDLIDQSIGKYNGDEAAMCIQLGLLCCQASVVERPDMNSVHLMLSSDSFTLPRPSKPGIQGRVGKWTTTNSSALTNTNASSTTRVSGGSSFVEDYSRNSISTSSFDEGR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07045 362 Gene3D Transferase(Phosphotransferase) domain 1 113 300 - -
Vifa1g07045 362 Gene3D Phosphorylase Kinase; domain 1 19 112 - -
Vifa1g07045 362 FunFam Cysteine-rich receptor-like protein kinase 41 107 303 - -
Vifa1g07045 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vifa1g07045 362 Pfam Protein kinase domain 56 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07045 362 Pfam Protein kinase domain 121 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07045 362 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 113 331 - -
Vifa1g07045 362 MobiDBLite consensus disorder prediction 323 362 - -
Vifa1g07045 362 SMART serkin_6 55 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07045 362 ProSiteProfiles Protein kinase domain profile. 55 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07045 362 SUPERFAMILY Protein kinase-like (PK-like) 43 310 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07045 Vifa-Chr1 1089012862 1089014672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07045 3 342 Receptor kinase-like Gene Family AT4G23150 43.089 1.09e-93 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g07045 Pkinase 2.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07045 - - tpra:123884781 624.394