Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07044 ATGTTTACATCAAGGAAGAAAATCAGCAAGGATAAGGGTGCTGAGCCAACTGAATTTGAGGAATCTGTTGGACAGGCTTTGTTTGATCTTGAAAATACCAATCATGAGTTGAAGAGTGAGTTGAAAGATTTATACATAAACTCTGCAGTTCAAGTTGATGTTTCTGGCAACCGCAAGGCTGTTGTTATCCATGTCCCATACAGATTGAGGAAGGGTTTCCGCAAAATTCATGTCAGGCTTGTTAGGGAGCTTGAGAAGAAGTTTAGCGGCAAGGATGTAATCCTGATTGCCACCAGGAGAATTGTAAGACCCCCAAAGAAAGGTTCAGCTGCTCAGCGCCCCCGCAGCAGAACACTCACTGCTGTTCATGAGGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAACGTACTAGGTACCGAGTTGATGGATCCAAGATCATGAAGGTGTTTTTGGACCCCAAGGAGAGGAACAACACTGAGTACAAGTTGGAGACCTTTTCTGCAGTTTATAGGAAATTGTCTGGCAAAGATGTTGTGTTTGAGTATCCCATTACCGAGGCTTAG 576 0.4427 MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRTRYRVDGSKIMKVFLDPKERNNTEYKLETFSAVYRKLSGKDVVFEYPITEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07044 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vifa1g07044 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vifa1g07044 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vifa1g07044 191 Coils Coil 27 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07044 Vifa-Chr1 1089010388 1089011798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07044 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 81.675 3.53e-117 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07044 K02993 - gmx:100527680 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07044 1 1089010388 1089011798 Vifa1g07044 1 1089010388 1089011798 ECH