Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07042 ATGGCTGAATTCACAGAAAACTTTCAAAATATTATTAGACCCTCTTTTCCTTTTCTTGATTCTGATCAAAGCATGGAACTTTTGAATCAATTCATGGAGAATTCTAACATGAACATGATGCAGAATTTGATGCCTTTTTCTTGTGACAACAGCATCTTGGAACATCATCAACAACAACATCATCAACAAGAACAAGAACAAGAACAAGAACATGTGTTTCCAAGAAACATGGAAGAGAATTATAATGGTCTTGTTCATCATCATCATCATGTTAATAATCACGACAATGCAGTTCAAGTTTCACTTCAAAATTTTCAAGAAGAAAATAAAGATATTCATGATGGTGGTAAAAAGAGGAAAATGATGGATTTTCAAGAGACTAGTTCGGCGAATTCAACTCCTGCAGTTTCTGAAACTGGAAGCAAAACCAAACTTTGTGGTGGAAGAGGGAAAAAAGTGAAAAGCTATGAAACAGAAGAAGAAAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGAAAAATCAATGAGAAATTGAGATGCTTGCAGAATATTGTTCCAGGATGTTACAAGACCATGGGAATGGCAGTGATGTTGGATGAAATCATAAACTATGTTCAGTCATTGCAGCATCAAGTAGAGTTTCTTTCATTGAAGCTTACTGCAGCAAGTACTTATTATGACTTCAATTCAGAGGCAGATGATTTAGAAACAATGCAGAGAGCAAGAGCATCTGAGGCAAAGGAATTAGCAATGTATAAGAGAGAAGGATATGGTGGAATTTCATGCTTTCAACCAACTTGGCCACTTTGA 861 0.3589 MAEFTENFQNIIRPSFPFLDSDQSMELLNQFMENSNMNMMQNLMPFSCDNSILEHHQQQHHQQEQEQEQEHVFPRNMEENYNGLVHHHHHVNNHDNAVQVSLQNFQEENKDIHDGGKKRKMMDFQETSSANSTPAVSETGSKTKLCGGRGKKVKSYETEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSEADDLETMQRARASEAKELAMYKREGYGGISCFQPTWPL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07042 286 Coils Coil 252 272 - -
Vifa1g07042 286 SMART finulus 181 231 IPR011598 GO:0046983
Vifa1g07042 286 FunFam transcription factor BEE 3-like 172 243 - -
Vifa1g07042 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 242 IPR036638 GO:0046983
Vifa1g07042 286 MobiDBLite consensus disorder prediction 127 149 - -
Vifa1g07042 286 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 58 249 IPR024097 GO:0006355
Vifa1g07042 286 Gene3D - 171 243 IPR036638 GO:0046983
Vifa1g07042 286 Pfam Helix-loop-helix DNA-binding domain 179 226 IPR011598 GO:0046983
Vifa1g07042 286 CDD bHLH_AtBPE_like 165 250 - -
Vifa1g07042 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 225 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07042 Vifa-Chr1 1088227899 1088229489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07042 45 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 47.451 6.53e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g07042 HLH 0.00019 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07042 - - gmx:100806942 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07042 1 1088227899 1088229489 Vifa1g07042 1 1088227899 1088229489 ECH