Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07027 ATGTTTCTTCAGCACAAGATGAACTTTGTGATCATGATCTCAACAGTTTCCTTGTTGACTATTTTATCGAACACAACAAGTGCGAAGAACGACCCGAATTGTTTGAGACGTTGTGGAGATGAAGTTCTTCAATATCCTTTTGCATTCTCTGAAAATTGCGGAATCAAATTGGACTGTTATGATAACCAGGCTCGAATTGGTGAGTTTCTGATTCAGAATGTAACTGAAAAGAGTTTGTTAATCTACCTTCCTGCGAAATGCAACCGGAGTATGGAATCTATTCAACCGCTTTTCGGTGAGAATTTTGCTCCGACGAGAAATAATAGTTTTCTAGTTCAAGGTTGTTCTGCTCCGCTTGGTGGATGTGTGATTCCGGCTTCGAGTTTTGTTGGAAATCAGATTGAAGTTGAGAGCTGTGATAGTAAAAGTAGTAATATAAGTTGTTTTAATGAACAAGAGGGGGAGGTTGATGTATTGAGTTATGAGGAGTTGAATAAAACTAAGTGTAACTATTTGTTCTCAGCTGTTTCGGTTGAACAGAATAAAGAGATTTCGTTGCAGTTTCAAGCTGTTGAATTAGGGTGGTGGATTCAAGGCTCTTGTGATTGTTCTGAGAATGCTACTTGCTCCAAGGTGCGTCTACAAGGAAATGGTTTTGGATTTCGGTGTCAGTGTTTGGATGGTTTCCGGGGAGATGGATTTGCCAAAGGTACCGGTTGCCAGAGAGTTGCCTTATCTTCAGCTCCAAGTTGCAGTGCTTCAACACTAACATCCGGAGGATGTGGGAGTGCAACCAAAATCGGTGTTGTTGTCGGAGTGATTATAACCGGAGTTGTGATCGTGGCTGCCCTCATTCTTTTATGCTACTGTGCTAGGCGCCGTTTTACTTGGTTGAGAAAGCATACCAGAGTAAAGCGTCTACTACGTGAAGCTGCAGGAAACTCTACTGTGCCTCTCTACACTTACAAAGACATAGAAAAGGCCACAAACTCTTTCTCTGAAAAACAGACACTAGGAACCGGGGCTTTCGGCACAGTCTATGCTGGAAAACTTTACAATGATGAGTTTGTTGCAATCAAGAAGATAAGACATAGAGACACTAATAGTGTTGATCAAGTTATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCGAATTTGGTTCGTCTCCTAGGTTGTTGCATTGAAGAGGGAGAGCAGATACTTGTTTATGAATATATGCCGAATGGAACACTGTCTCAGCATTTGCAAAGAGAGAGAGGTAAAGGTCTTCCGTGGACGATACGACTCACCATTGCTTCTGAAACTGCTAATGCTATAGCTTATCTCCATTCTGCAATTCATCCACCAATTTACCACAGAGACATAAAATCCAGTAATATACTACTGGATTATAACTACAAATCTAAAGTAGCTGATTTTGGGCTTTCTAGGCTTGGTATGTTAGAGACATCACATATTTCAACTGCTCCGCAAGGAACTCCGGGTTATGTGGATCCCCAATACCACCAGAACTTCCACCTTTCTGATAAAAGTGATGTGTACAGCTTTGGAGTGGTTTTGGTAGAGATAATTACTGCCATGAAAGTGGTTGATTTTGGTAGACCTCAGAGTGAGATTAATTTAGCTGCACTTGCTGTTGATAGGATTAGGAGGGGTTCTATAGATGAGATTGTGGATCCCTTCATTGAACCAAATAGAGATGCTTGGACTCTATATTCCATTCATAAGGTGGCTGAGCTTGCATTTAGATGTCTTGCTTTTCACAGTGACACAAGGCCGACAATGATGGAGGTGGCCGAAGAGCTGGAGTACATCAGACGCCGTGCATGGACAACTATGGAGGAAGCTATATGTTTGGGTTCATCGGTTGGGTCTGCGAGTTCATCGCCTCGCGATGGAAGTGAGAAGTCAGTGAGTGGTATTAAGTTGAATAAAGTAGGACAAGAAATTGAAGGATTGATTGTTCCACACAAGAATGAAAACTTGCTGCAATCTATGGAATTGGAGGTGAAAGACAGTTCCCCTGTATCAGTGCATAATCCGTGGTCGAGTGGAAATAGCTCGCCTTCAACAAACAGCTTGTTGGGAAATATCGTACGGTGA 2109 0.4206 MFLQHKMNFVIMISTVSLLTILSNTTSAKNDPNCLRRCGDEVLQYPFAFSENCGIKLDCYDNQARIGEFLIQNVTEKSLLIYLPAKCNRSMESIQPLFGENFAPTRNNSFLVQGCSAPLGGCVIPASSFVGNQIEVESCDSKSSNISCFNEQEGEVDVLSYEELNKTKCNYLFSAVSVEQNKEISLQFQAVELGWWIQGSCDCSENATCSKVRLQGNGFGFRCQCLDGFRGDGFAKGTGCQRVALSSAPSCSASTLTSGGCGSATKIGVVVGVIITGVVIVAALILLCYCARRRFTWLRKHTRVKRLLREAAGNSTVPLYTYKDIEKATNSFSEKQTLGTGAFGTVYAGKLYNDEFVAIKKIRHRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEYMPNGTLSQHLQRERGKGLPWTIRLTIASETANAIAYLHSAIHPPIYHRDIKSSNILLDYNYKSKVADFGLSRLGMLETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFGRPQSEINLAALAVDRIRRGSIDEIVDPFIEPNRDAWTLYSIHKVAELAFRCLAFHSDTRPTMMEVAEELEYIRRRAWTTMEEAICLGSSVGSASSSPRDGSEKSVSGIKLNKVGQEIEGLIVPHKNENLLQSMELEVKDSSPVSVHNPWSSGNSSPSTNSLLGNIVR 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07027 702 ProSiteProfiles Protein kinase domain profile. 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07027 702 FunFam Wall-associated receptor kinase-like 14 299 407 - -
Vifa1g07027 702 Pfam Protein kinase domain 332 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07027 702 Gene3D Phosphorylase Kinase; domain 1 294 407 - -
Vifa1g07027 702 Gene3D Laminin 196 237 - -
Vifa1g07027 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Vifa1g07027 702 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 688 IPR044652 GO:0004672
Vifa1g07027 702 SMART serkin_6 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07027 702 FunFam Wall-associated receptor kinase-like 20 408 617 - -
Vifa1g07027 702 Gene3D Transferase(Phosphotransferase) domain 1 408 621 - -
Vifa1g07027 702 ProSitePatterns Protein kinases ATP-binding region signature. 338 361 IPR017441 GO:0005524
Vifa1g07027 702 MobiDBLite consensus disorder prediction 676 702 - -
Vifa1g07027 702 SUPERFAMILY Protein kinase-like (PK-like) 313 606 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07027 Vifa-Chr1 1086488894 1086492733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07027 1 702 Receptor kinase-like Gene Family AT2G23450 55.462 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa1g07027 Pkinase 7.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07027 - - gmx:100779130 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07027 1 1086488894 1086492733 Vifa4g02523 4 764122233 764126150 PCT