Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07026 ATGTTTCTTCAGCACAAGATGAACTTTGTGATCATGATCTCAACAGTTTCCTTGTTGACTATTTTATCGAACACAACAAGTGCGAAGAACGACCCGAATTGTTTGAGACGTTGTGGAGATGAAGTTCTTCAATATCCTTTTGCATTCTCTGAAAATTGCGGAATCAAATTGGACTGTTATGATAACCAGGCTCGAATTGGTGAGTTTCTGATTCAGAATGTAACTGAAAAGAGTTTGTTAATCTACCTTCCTGCGAAATGCAACCGGAGTATGGAATCTATTCAACCGCTTTTCGGTGAGAATTTTGCTCCGACGAGAAATAATAGTTTTCTAGTTCAAGGTTGTTCTGCTCCGCTTGGTGGATGTGTGATTCCGGCTTCGAGTTTTGTTGGAAATCAGATTGAAGTTGAGAGCTGTGATAGTAAAAGTAGTAATATAAGTTGTTTTAATGAACAAGAGGGGGAGGTTGATGTATTGAGTTATGAGGAGTTGAATAAAACTAAGTGTAACTATTTGTTCTCAGCTGTTTCGGTTGAACAGAATAAAGAGATTTCGTTGCAGTTTCAAGCTGTTGAATTAGGGTGGTGGATTCAAGGCTCTTGTGATTGTTCTGAGAATGCTACTTGCTCCAAGGTGCGTCTACAAGGAAATGGTTTTGGATTTCGGTGTCAGTGTTTGGATGGTTTCCGGGGAGATGGATTTGCCAAAGGTACCGGTTGCCAGAGAGCTCCAAGTTGCAGTGCTTCAACACTAACATCCGGAGGATGTGGGAGTGCAACCAAAATCGGTGTTGTTGTCGGAGTGATTATAACCGGAGTTGTGATCGTGGCTGCCCTCATTCTTTTATGCTACTGTGCTAGGCGCCGTTTTACTTGGTTGAGAAAGCATACCAGAGTAAAGCGTCTACTACGTGAAGCTGCAGGAAACTCTACTGTGCCTCTCTACACTTACAAAGACATAGAAAAGGCCACAAACTCTTTCTCTGAAAAACAGACACTAGGAACCGGGGCTTTCGGCACAGTCTATGCTGGAAAACTTTACAATGATGAGTTTGTTGCAATCAAGAAGATAAGACATAGAGACACTAATAGTGTTGATCAAGTTATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCGAATTTGGTTCGTCTCCTAGGTTGTTGCATTGAAGAGGGAGAGCAGATACTTGTTTATGAATATATGCCGAATGGAACACTGTCTCAGCATTTGCAAAGAGAGAGAGGTAAAGGTCTTCCGTGGACGATACGACTCACCATTGCTTCTGAAACTGCTAATGCTATAGCTTATCTCCATTCTGCAATTCATCCACCAATTTACCACAGAGACATAAAATCCAGTAATATACTACTGGATTATAACTACAAATCTAAAGTAGCTGATTTTGGGCTTTCTAGGCTTGGTATGTTAGAGACATCACATATTTCAACTGCTCCGCAAGGAACTCCGGGTTATGTGGATCCCCAATACCACCAGAACTTCCACCTTTCTGATAAAAGTGATGTGTACAGCTTTGGAGTGGTTTTGGTAGAGATAATTACTGCCATGAAAGTGGTTGATTTTGGTAGACCTCAGAGTGAGATTAATTTAGCTGCACTTGCTGTTGATAGGATTAGGAGGGGTTCTATAGATGAGATTGTGGATCCCTTCATTGAACCAAATAGAGATGCTTGGACTCTATATTCCATTCATAAGGTGGCTGAGCTTGCATTTAGATGTCTTGCTTTTCACAGTGACACAAGGCCGACAATGATGGAGGTGGCCGAAGAGCTGGAGTACATCAGACGCCGTGCATGGACAACTATGGAGGAAGCTATATGTTTGGGTTCATCGGTTGGGTCTGCGAGTTCATCGCCTCGCGATGGAAGTGAGAAGTCAGTGAGTGGTATTAAGTTGAATAAAGTAGGACAAGAAATTGAAGGATTGATTGTTCCACACAAGAATGAAAACTTGCTGCAATCTATGGAATTGGAGGTGAAAGACAGTTCCCCTGTATCAGTGCATAATCCGTGGTCGAGTGGAAATAGCTCGCCTTCAACAAACAGCTTGTTGGGAAATATCGTACGGTGA 2094 0.4207 MFLQHKMNFVIMISTVSLLTILSNTTSAKNDPNCLRRCGDEVLQYPFAFSENCGIKLDCYDNQARIGEFLIQNVTEKSLLIYLPAKCNRSMESIQPLFGENFAPTRNNSFLVQGCSAPLGGCVIPASSFVGNQIEVESCDSKSSNISCFNEQEGEVDVLSYEELNKTKCNYLFSAVSVEQNKEISLQFQAVELGWWIQGSCDCSENATCSKVRLQGNGFGFRCQCLDGFRGDGFAKGTGCQRAPSCSASTLTSGGCGSATKIGVVVGVIITGVVIVAALILLCYCARRRFTWLRKHTRVKRLLREAAGNSTVPLYTYKDIEKATNSFSEKQTLGTGAFGTVYAGKLYNDEFVAIKKIRHRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEYMPNGTLSQHLQRERGKGLPWTIRLTIASETANAIAYLHSAIHPPIYHRDIKSSNILLDYNYKSKVADFGLSRLGMLETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFGRPQSEINLAALAVDRIRRGSIDEIVDPFIEPNRDAWTLYSIHKVAELAFRCLAFHSDTRPTMMEVAEELEYIRRRAWTTMEEAICLGSSVGSASSSPRDGSEKSVSGIKLNKVGQEIEGLIVPHKNENLLQSMELEVKDSSPVSVHNPWSSGNSSPSTNSLLGNIVR 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07026 697 Gene3D Phosphorylase Kinase; domain 1 289 402 - -
Vifa1g07026 697 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 683 IPR044652 GO:0004672
Vifa1g07026 697 FunFam Wall-associated receptor kinase-like 14 294 402 - -
Vifa1g07026 697 SUPERFAMILY Protein kinase-like (PK-like) 308 601 IPR011009 -
Vifa1g07026 697 Gene3D Laminin 200 235 - -
Vifa1g07026 697 Gene3D Transferase(Phosphotransferase) domain 1 403 616 - -
Vifa1g07026 697 MobiDBLite consensus disorder prediction 671 697 - -
Vifa1g07026 697 ProSiteProfiles Protein kinase domain profile. 327 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07026 697 ProSitePatterns Protein kinases ATP-binding region signature. 333 356 IPR017441 GO:0005524
Vifa1g07026 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vifa1g07026 697 SMART serkin_6 327 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07026 697 Pfam Protein kinase domain 327 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07026 697 FunFam Wall-associated receptor kinase-like 20 403 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07026 Vifa-Chr1 1086488894 1086492733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07026 1 697 Receptor kinase-like Gene Family AT2G23450 55.915 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa1g07026 Pkinase 7.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07026 - - gmx:100779130 976.467