Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07021 ATGGCGGAAGAGAGAGCCGCAATGGAAGAGAGTCTATTAGGAAAAGAGATTGTTTCGAAAGCAATGAGCAAGGATATTTACATGAAAGAAATGAAGAAGATTTGTTATTTAGCAGGTCCAATGGTAGCAATAGGCTTGTCACAGTATTTGTTGCAGACAGTTTCAATCATAATAGTTGGTCATTTGGGTGAACTCTATCTCTCTAGTGCCGCCTTATCCATCTCCTTCACCACTGTCACTGGTTTCAGCTTCCTGGTGGGAATGTCCTGTGGACTAGAAACCATATGTGGACAAGCTTATGGAGCAAAACAGTATCAAAGAATAGGAATGCAAACATACACAGCTATCTTTTCTCTCATCTTGGTTTGTCTTCCACTATCTTTCATTTGGATCAACATTGAAAACATACTTGTTTTCACAGGACAAGACCCTCTTATTGCGCATGAAGCTGGAAGATTCACTATTTGGCTTCTTCCTGCACTTTTTGCATATGCAATATTGCAACCATTAGTGAAATATTTTCAAATACAAAGCTTGCTTACTCCAATGCTTTTAAGCTCTTGTGTCACTCTTGTTGTCCATATACCTCTTTGTTGGGCTTTGGTATTCAAGACAGGATTGAATAATATTGGTGGAGCAATTGCAATGAGCATTTCCATTTGGTTAAATGTGATTTTTCTTGCATTGTACATGAGATACTCTTCTTTATGTGCAAAAACTCGAGCTCCAATTTCTATGGAGCTATTCCAAGGAATTTGGGAGTTTTTGCGCTTTGCTATACCTTCTGCAGTAATGGTTTGCCTTGAATGGTGGTCATATGAGTTAATGGTCTTACTCTCTGGGCTGTTACCCAATCCACAGCTTGAAACTTCAGTTCTATCAGTTTGTCACAATACGATTGGAACTCTCTTTATGATACCATTTGGAATTAGTGCTGCAGCAAGCACGAGAGTTTCAAACGAATTAGGAGCTGGCAATCCATTTGAAGCACGTGTTGCTGTGTTAGGTGCCATGTCACTTGCAGTCATAGAAGCAGGTATAGTGAGTGGAACCCTTTTTGCATGCCGCCATGTTTATGGTTACGTTTTCAGCAATGATAAGGAAGTTATTGATTATGTCACTGTCATGGCTCCTTTGGTTTCTATATCTGTTATATTGGACAGCATACAAGGTGTTCTCACAGGCATATGTTGCTGTCGTACAGTGAATCAAAACTATGCAAATATTATTTTGATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTGAGTCTAGCTACCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAGACTTTGCTATGATCGAGATAATTAG 1347 0.3972 MAEERAAMEESLLGKEIVSKAMSKDIYMKEMKKICYLAGPMVAIGLSQYLLQTVSIIIVGHLGELYLSSAALSISFTTVTGFSFLVGMSCGLETICGQAYGAKQYQRIGMQTYTAIFSLILVCLPLSFIWINIENILVFTGQDPLIAHEAGRFTIWLLPALFAYAILQPLVKYFQIQSLLTPMLLSSCVTLVVHIPLCWALVFKTGLNNIGGAIAMSISIWLNVIFLALYMRYSSLCAKTRAPISMELFQGIWEFLRFAIPSAVMVCLEWWSYELMVLLSGLLPNPQLETSVLSVCHNTIGTLFMIPFGISAAASTRVSNELGAGNPFEARVAVLGAMSLAVIEAGIVSGTLFACRHVYGYVFSNDKEVIDYVTVMAPLVSISVILDSIQGVLTGICCCRTVNQNYANIILMLLRLRQACDHPLSLATVLEIMELQGGQIRLCYDRDN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07021 448 Pfam MatE 40 199 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g07021 448 Pfam MatE 261 397 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g07021 448 CDD MATE_eukaryotic 30 397 IPR045069 GO:0042910|GO:1990961
Vifa1g07021 448 PANTHER MULTIDRUG RESISTANCE PROTEIN 25 409 - -
Vifa1g07021 448 NCBIfam MATE family efflux transporter 40 410 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07021 Vifa-Chr1 1085746318 1085749049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07021 401 423 RAD5 or RAD16-like Gene Family AT1G50410 91.304 1.33e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07021 K03327 - gmx:100788647 619.002