Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07013 ATGGAGGAAAATCTACCTCCTGGTTTTAGGTTTCATCCAACAGATGAAGAACTCATTACTCATTATCTTACAATGAAAATTTCTGATACTTCCTTCACATCAAAAGCTGTTGCAGTTGTTGATCTCAACAAATCTGAACCTTGGGATCTCCCAGGTAAAGCTTCAATGGGAGAGAAAGAATGGTATTTCTTCAGCATGAGAGATAGAAAATATCCAACTGGTCTTCGAACCAATCGAGCTACTGAATCAGGATACTGGAAAACAACAGGAAAAGATAGAGAAATATTTCGTGGTGGAGTGTTGGTAGGAATGAAGAAAACCCTAGTTTTCTATAAGGGTAGAGCTCCAAGGGGTGAGAAAAGTAATTGGGTTATGCATGAATATAGACTAGAAAACAAACACCATTTTCGTACTTCAAAGGATGAATGGGTGGTTTGTAGGGTTTTCCAAAAGAGCATAGCAACAAAAAAGCCACAACAAACATCATCTTCTCAACTAGAATCTCCATGTGACACAACCTCAATGGTGAATGAATTTGGTGATGTAGAGTTTCCAAATCTAAATAATATTGCAACAAACTCAACATCATCATTATCAAGTGGACTAATCACTAACATGATTTCAGGACAACAACAAACTTTCAACATTAATGATCATCTCACTAATAATGTTAACACAAATATGAACTTGATGACAATGAATTGGCCTTCTTCAAGTGAAGTTCCATCTCTACCATGGTCTTCTAACTTGTTGAATCCAAATAATATTTCTGTAAATTCATTGCTTCTAAAAGCATTACAACTTAGGAATTATCAACAACAAAGAGAAGTTGAAGCTACAAATCATTTTGTCCCATATATGCCTCAACAAGGAGTTGGATATCATCAACTTGGAACTGATCAACAAAGTAATAATTCAAATGATCCAAGTGCTTCTTCTTCAAAAGTTTTAGAATGTATGCCACAACAACATCAACAGGAGCAACCATTCAATTTGGACTCCATTGGTGAATTGTTGTTTTCAAAAGTATCATGA 1035 0.3536 MEENLPPGFRFHPTDEELITHYLTMKISDTSFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSMRDRKYPTGLRTNRATESGYWKTTGKDREIFRGGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKSIATKKPQQTSSSQLESPCDTTSMVNEFGDVEFPNLNNIATNSTSSLSSGLITNMISGQQQTFNINDHLTNNVNTNMNLMTMNWPSSSEVPSLPWSSNLLNPNNISVNSLLLKALQLRNYQQQREVEATNHFVPYMPQQGVGYHQLGTDQQSNNSNDPSASSSKVLECMPQQHQQEQPFNLDSIGELLFSKVS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07013 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 247 - -
Vifa1g07013 344 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Vifa1g07013 344 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Vifa1g07013 344 MobiDBLite consensus disorder prediction 294 328 - -
Vifa1g07013 344 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Vifa1g07013 344 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
Vifa1g07013 344 MobiDBLite consensus disorder prediction 290 328 - -
Vifa1g07013 344 FunFam NAC domain-containing protein 100-like 14 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07013 Vifa-Chr1 1083834188 1083836333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07013 1 335 NAC Transcription Factor Family AT3G18400 56.395 5.17e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g07013 NAM 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07013 - - gmx:100787111 451.055