Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07006 ATGAATTCACAACCTAACAACCATACTACAGAATCTAAGGATGTTGGTAGTTCGAGTTCTAATTCGAGCGGAAATAATAACTTACCTCAGAAAAAGATTTTGTCTGACTCGAAGTTTCAACATACGACAGAGCCATCGGGTGCCTTAAACCAAGTCAGACATAGGTTTCCAGATGTATTTCAACAAAAAGGTGGAAGCTATGCAGATCTTCCTGCTGCTAAAATTTCCGAGCTAATGAAATCATCAAGTTTGGATAATGCTCCTACTCAATCACTTTTGAGTGTTGTGAATGGTATCCTAGAAGAAAGTGTCGAAAGAAGAAATGGAGAAATACCACCTCGTGTGGCTTGCTTGTTAAGAAAAGTTGTTCAAGAGATCGAGCGGAGAATATCGACACAACAAGGACATTTAAGAACTCAAAACAATCTTTTTAAAACTCGCGAAGAAAAATATCAATCAAGAATAAGAGTACTTGAAGCTCTAGCATCAGGAACCAATGAGGAGAATATCATAAAGGAAGAAAAAAGTGCACATGACTCAAAGCCAATTGAGAAGATTGTAATAGAAGAAAAGAAGACAAAAGATATAAATCATGTTGAAAAGACTAAAGAGGATGAAAAAAAGAAAGAAATTGATAGGGAAGTTATTAGATTAATGAAAGAAGTGGAAGACAAAAATATGGAAAAGAAGGAGATTGATAAAGAAGTTAAGAGATTGATCAAAGAGGTTGAAGAAAAAAATATGGAAAAGAAGGAGATTGATAAAGAAGTTAAGAGATTGATCAAAGAGGTTGAAGAAAAAAATATGGAAATTTCAACATTCAAGCAAGAACTAGAAAAAATGAAAAAAAGATACGAAGTACAATGTACAAAGATCGAAAATATAGAAAGGAAGGATATTGATAAAGAAGTGGAAGGAAAAAATATGGAAAAGAGGGAAGTTGATGAAGAAATTATGAGATTGAAGAAAGAGGTCGAAGAAAAAAGTATGGAAAAGAAGGAAATTGATAAAGAAGTTATGAGATTGAAGAAAGAGGTGGAAGAAAAAAATGTGGAAATTTCGACGATGAAGCAAGAACTTGAAACAATGAAAAATAGATATGAAGAACAATGTTCAAAGTTGAAATCGGAAGCCGAGGATGTTGAATTAGAATTGAAACAGAAATCGCGAGAACATGAGGCTATAATGGAAAAGTTAAGAAATAAGGTTAGAGAGAGTGAAGCTATTATGGAGTCAAAATATCAGAAGTGGAACATGAAACAAAACATAATACAGAAAGCTGTCAGTTTTCAATTCAGTTCCATACAGAAATTGAAATTGTCTTGGGAATCTATCAAGCAAGATGTTGTGAAAGAGAGAATGATTTACAAAGAGGAATGCAATCGACTAGGTGTGAATCTTAAACCACTAGTGCATGCAGCTGAGAATTATCAAACAGTTCTTGCTGAAAATAGAAAATTATTCAATGAACTTCAAGAATTAAAAGGAAATATTAGAGTATATTGTAGAATTAGACCCTTTATTCCTGGACAAAAAGAAAAACAATCTATTGTTGAGCGCATTGGCGAATCAGATTTGGTTGTAGCAAATCCATCCAAACAAGGGAAAGAAGCACTTAAAACATTTAAGTTTAACAAGATCTTTGGTCCTACCTCAACTCAAGCTGAGGTGTACGATGATATACAAGACTTTATAAGATCAGTACTTGATGGTTTTAATGTGTGCATATTTGCTTATGGACAGACAGGTTCAGGAAAAACTTATACAATGAGTGGCCCAAATGGTGCAACTAATGAGAGTCTTGGTGTTAACTATCGAGCTCTAAATGACCTCTTCAACATATCCTCAAGTAGACAAAGTTCCATAGTTTATGACATTGGAGTTCAAATAATTGAGATCTATAATGAACAAGTTCGCGATTTGCTAACAACCGATATATCTGTCAAAAATTGGGATATTGAATCACTCTCAACCAAATGGTTTAGCAGTACCTGA 1995 0.3383 MNSQPNNHTTESKDVGSSSSNSSGNNNLPQKKILSDSKFQHTTEPSGALNQVRHRFPDVFQQKGGSYADLPAAKISELMKSSSLDNAPTQSLLSVVNGILEESVERRNGEIPPRVACLLRKVVQEIERRISTQQGHLRTQNNLFKTREEKYQSRIRVLEALASGTNEENIIKEEKSAHDSKPIEKIVIEEKKTKDINHVEKTKEDEKKKEIDREVIRLMKEVEDKNMEKKEIDKEVKRLIKEVEEKNMEKKEIDKEVKRLIKEVEEKNMEISTFKQELEKMKKRYEVQCTKIENIERKDIDKEVEGKNMEKREVDEEIMRLKKEVEEKSMEKKEIDKEVMRLKKEVEEKNVEISTMKQELETMKNRYEEQCSKLKSEAEDVELELKQKSREHEAIMEKLRNKVRESEAIMESKYQKWNMKQNIIQKAVSFQFSSIQKLKLSWESIKQDVVKERMIYKEECNRLGVNLKPLVHAAENYQTVLAENRKLFNELQELKGNIRVYCRIRPFIPGQKEKQSIVERIGESDLVVANPSKQGKEALKTFKFNKIFGPTSTQAEVYDDIQDFIRSVLDGFNVCIFAYGQTGSGKTYTMSGPNGATNESLGVNYRALNDLFNISSSRQSSIVYDIGVQIIEIYNEQVRDLLTTDISVKNWDIESLSTKWFSST 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07006 664 Coils Coil 208 298 - -
Vifa1g07006 664 Gene3D - 251 293 - -
Vifa1g07006 664 Gene3D - 333 377 - -
Vifa1g07006 664 MobiDBLite consensus disorder prediction 1 49 - -
Vifa1g07006 664 Pfam Microtubule binding 483 642 IPR031852 GO:0008017
Vifa1g07006 664 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 439 651 - -
Vifa1g07006 664 Coils Coil 304 416 - -
Vifa1g07006 664 PANTHER KINESIN-LIKE PROTEIN KLP-3 27 326 IPR027640 GO:0003777|GO:0007018
Vifa1g07006 664 ProSiteProfiles Kinesin motor domain profile. 497 664 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g07006 664 MobiDBLite consensus disorder prediction 1 53 - -
Vifa1g07006 664 Coils Coil 477 497 - -
Vifa1g07006 664 Gene3D Kinesin motor domain 438 659 IPR036961 -
Vifa1g07006 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 647 IPR027417 -
Vifa1g07006 664 SMART kinesin_4 495 664 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07006 Vifa-Chr1 1082413084 1082416540 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07006 180 642 Calmodulin-binding Proteins AT5G65930 25.800 4.81e-24 106